5856 Na_Ca_ex
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5856 chr_6 Na_Ca_ex 53201 56299 - Na_Ca_ex

Synonyms

NCBI ID Ensembl Genomes exon ID
7446390 Thaps5856.3, Thaps5856.1, Thaps5856.5, Thaps5856.4, Thaps5856.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0333

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9297

267979

HCO3_cotransp superfamily
0.9096

13308

PLN02948
0.9051

1568

SRPBCC superfamily
0.8813

39062

SpoU
0.8775

39592

(NRT3) 2A0108
0.8741

5778

hypothetical protein
0.8709

260852

PRK04194
0.8706

263203

Amidase superfamily
0.8698

6608

CAP10 superfamily
0.8677

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Na_Ca_ex superfamily Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane... - 60.6936 8.86E-11 226 - 380 superfamily 250805
Na_Ca_ex superfamily Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane... - 60.6936 8.86E-11 226 - 380 superfamily 250805
Na_Ca_ex superfamily Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane... - 60.6936 8.86E-11 226 - 380 superfamily 250805
Na_Ca_ex superfamily Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane... - 60.6936 8.86E-11 226 - 380 superfamily 250805

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 449053 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016021 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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