21110 Sun
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21110 chr_2 Sun 155782 159639 + Sun

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0224

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0193
 0.22

Most Highly Correlated Transcripts

3944

COG0218
0.9255

24217

hypothetical protein
0.9157

25473

SpoU_methylase
0.9118

35911

COG1092
0.9071

21050

Ras_like_GTPase superfamily
0.9041

23679

Diphthamide_syn superfamily
0.9026

33985

PseudoU_synth_PUS1_PUS2
0.8999

34021

Methyltrn_RNA_3
0.8976

22499

TrmA
0.8974

5540

hypothetical protein
0.8949

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NusB NusB family; The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional... cl00223 74.1718 2.34E-15 512 - 655 specific 250306
NusB_Sun superfamily RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu)... - 74.1718 2.34E-15 512 - 655 superfamily 260276
Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] - 206.857 5.30E-59 613 - 1013 multi-dom 223222

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd1660 PHATRDRAFT_bd1660 184110 160519 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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