263350 (RPC25) RPB7
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263350 chr_8 (RPC25) RPB7 224826 225807 + RPB7

Synonyms

NCBI ID Ensembl Genomes exon ID
7452428 Thaps263350.3, Thaps263350.4, Thaps263350.2, Thaps263350.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0234
 0.27

Most Highly Correlated Transcripts

3858

PTZ00141
0.9306

8541

PRK00142
0.9293

23336

SRP40_C superfamily
0.9051

25473

SpoU_methylase
0.9022

23679

Diphthamide_syn superfamily
0.9007

5666

Las1 superfamily
0.8969

3944

COG0218
0.8961

25434

PRK00142
0.896

2392

hypothetical protein
0.8921

34176

AdoMet_MTases superfamily
0.8908

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNAP_III_Rpc25_N RNAP_III_Rpc25_N: Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of... cl04309 102.672 5.00E-28 2 - 82 specific 239822
RNAP_Rpb7_N_like superfamily RNAP_Rpb7_N_like: This conserved domain represents the N-terminal ribonucleoprotein (RNP) domain of... - 102.672 5.00E-28 2 - 82 superfamily 262095
RNA_pol_Rbc25 superfamily RNA polymerase III subunit Rpc25; Rpc25 is a strongly conserved subunit of RNA polymerase III and... - 121.673 7.63E-35 80 - 199 superfamily 254712
RNA_pol_Rbc25 superfamily RNA polymerase III subunit Rpc25; Rpc25 is a strongly conserved subunit of RNA polymerase III and... - 121.673 7.63E-35 80 - 199 superfamily 254712
RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] - 127.41 2.63E-36 1 - 200 multi-dom 224020

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19835 PHATRDRAFT_19835 142959 23096 Not available Cre12.g538400.t1.2 AT1G06790.1 538886

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003899 GO:0006350 GO:0003900 GO:0003901 GO:0003902 -

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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