22727 RCC1
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
22727 chr_5 RCC1 1143201 1147408 + RCC1
NCBI ID Ensembl Genomes exon ID
7450059 Thaps22727.2, Thaps22727.1, Thaps22727.3
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0425
Normalized Mean Residue
Thaps_bicluster_0047
0.45
EEP superfamily
0.9093
hypothetical protein
0.9041
AAA
0.8959
0.8908
(APA1) Adaptin_N
0.8875
COG3899
0.8813
Adaptin_N
0.8803
COG3899
0.875
COG3899
0.8739
PDEase_I
0.8738
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 63.3147 4.01E-12 503 - 555 superfamily 249843
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 63.3147 4.01E-12 503 - 555 superfamily 249843
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45032 PHATRDRAFT_45032 151574 165220 Not available Not available Not available 498697
KEGG description KEGG Pathway
Not available Not available
GO:0003676 GO:0005634 GO:0008270 GO:0008766 GO:0016881 GO:0018169 -

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity

Details: 
Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.
GO Category: 
MF

acid-amino acid ligase activity

Details: 
Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

ribosomal S6-glutamic acid ligase activity

Details: 
Catalysis of the posttranslational transfer of one or more glutamic acid residues to the C-terminus of ribosomal protein S6.
GO Category: 
MF
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