6383 PTZ00162Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6383	chr_6	PTZ00162	1441604	1442155	+	PTZ00162

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453303	Thaps6383.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0181

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0120	0.39	0.0037 0.51

Most Highly Correlated Transcripts

41655 Chloroa_b-bind 0.9248	38331 YIP1 superfamily 0.9169	4722 hypothetical protein 0.9107	3341 hypothetical protein 0.909	36964 PLN02716 0.9083	25068 hypothetical protein 0.908
269624 TIM_phosphate_binding superfamily 0.9074	6093 hypothetical protein 0.907	2988 hypothetical protein 0.9067	37934 GRX_PICOT_like 0.9038

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
S1_like superfamily		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	-	105.035	3.30E-29	85 - 171	superfamily	263921
RNAP_Rpb7_N_like superfamily		RNAP_Rpb7_N_like: This conserved domain represents the N-terminal ribonucleoprotein (RNP) domain of...	-	72.2147	4.48E-17	2 - 82	superfamily	262095
PTZ00162		DNA-directed RNA polymerase II subunit 7; Provisional	-	146.388	3.81E-44	1 - 175	multi-dom	240298

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_35680	PHATRDRAFT_35680	181715	242590	Not available	Cre16.g667750.t1.2	AT5G59180.1	303395

KEGG

KEGG description	KEGG Pathway
RNA polymerase	map03020

GO Terms

GO:0003899 GO:0006350 GO:0003900 GO:0003901 GO:0003902 -

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