Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_2205(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_2205
|Gene||Common Name||Description||Module membership|
|RSP_0163||RSP_0163||putative iron(III) ABC transporter, fused inner membrane subunits (NCBI)||115, 234|
|RSP_0358||gor||probable glutathione reductase (NCBI)||234, 299|
|RSP_0364||RSP_0364||possible transporter, RarD family, DMT superfamily (NCBI)||38, 234|
|RSP_0371||RSP_0371||ABC basic amino acid transporter, ATPase subunit (NCBI)||67, 114|
|RSP_0372||RSP_0372||ABC basic amino acid transporter, solute-binding protein (NCBI)||67, 114|
|RSP_0375||RSP_0375||probable glutamine synthetase (NCBI)||65, 67|
|RSP_0418||RSP_0418||hypothetical protein (NCBI)||58, 234|
|RSP_0463||RSP_0463||cation efflux transporter, CDF family (NCBI)||22, 67|
|RSP_0551||RSP_0551||putative thymidylate kinase (NCBI)||234, 340|
|RSP_0565||RSP_0565||putative phosphatidylcholine synthase (NCBI)||67, 108|
|RSP_0724||mscL||Large-conductance mechanosensitive channel (NCBI)||59, 234|
|RSP_0729||lysA||Orn/DAP/Arg decarboxylase, family 2 (NCBI)||54, 234|
|RSP_0755||nusB||putative N utilization substance protein B (NCBI)||234, 240|
|RSP_0804||DppD||ABC dipeptide transporter, ATPase subunit DppD (NCBI)||67, 114|
|RSP_0805||DppC||ABC dipeptide transporter, inner membrane subunit DppC (NCBI)||57, 67|
|RSP_0809||RSP_0809||hypothetical protein (NCBI)||67, 207|
|RSP_0973||RSP_0973||MaoC family protein (NCBI)||67, 118|
|RSP_1144||Gst||Glutathione S-transferase (NCBI)||67, 245|
|RSP_1145||RSP_1145||Peptidoglycan transglycosylase (NCBI)||67, 254|
|RSP_1186||RSP_1186||hypothetical protein (NCBI)||59, 67|
|RSP_1233||maf||putative Maf/YceF/YhdE family protein (NCBI)||87, 234|
|RSP_1306||RSP_1306||PAS sensor Signal Tranduction Histidine Kinase (NCBI)||4, 234|
|RSP_1340||RSP_1340||Enoyl-CoA hydratase/isomerase (NCBI)||67, 384|
|RSP_1389||aroC||Chorismate synthase (NCBI)||181, 234|
|RSP_1391||thiB||ABC thiamine transporter, periplasmic substrate-binding protein (NCBI)||121, 234|
|RSP_1392||thiP||ABC thiamine transporter, inner membrane subunit (NCBI)||233, 234|
|RSP_1462||lpxK||Putative Tetraacyldisaccharide-1-P 4'-kinase (NCBI)||84, 234|
|RSP_1472||RSP_1472||hypothetical protein (NCBI)||113, 234|
|RSP_1800||RSP_1800||hypothetical protein (NCBI)||234, 293|
|RSP_1853||TrkH2||potassium uptake transporter, transmembrane component, TrkH (NCBI)||29, 67|
|RSP_1854||trkH3||potassium uptake transporter, transmembrane component, TrkH (NCBI)||67, 288|
|RSP_1928||dnaB||Replicative DNA helicase, DnaB (NCBI)||76, 234|
|RSP_2171||metR||transcriptional regulator, LysR family (NCBI)||67, 259|
|RSP_2205||RSP_2205||hypothetical protein (NCBI)||67, 234|
|RSP_2206||RSP_2206||hypothetical protein (NCBI)||67, 234|
|RSP_2207||deoD||purine nucleoside phosphorylase (NCBI)||67, 110|
|RSP_2208||RSP_2208||ABC sugar transporter, inner membrane subunit (NCBI)||67, 174|
|RSP_2209||RSP_2209||ABC sugar transporter, inner membrane subunit (NCBI)||67, 174|
|RSP_2211||RSP_2211||ABC transporter, periplasmic substrate-binding protein (NCBI)||67, 70|
|RSP_2306||RSP_2306||putative HAD superfamily protein (NCBI)||234, 279|
|RSP_2332||RSP_2332||hypothetical protein (NCBI)||67, 72|
|RSP_2407||RSP_2407||periplasmic sensor hybrid histidine kinase (NCBI)||234, 322|
|RSP_2492||RSP_2492||Possible transporter, RhaT family, DMT superfamily (NCBI)||54, 234|
|RSP_2541||tatC||twin-arginine translocation system protein, TatC (NCBI)||67, 291|
|RSP_2730||RSP_2730||Transcriptional regulator, ArsR family (NCBI)||67, 95|
|RSP_2800||acoR||Putative AcoR, Transcriptional activator of acetoin/glycerol metabolism (NCBI)||234, 337|
|RSP_2817||aroK||Putative shikimate kinase (NCBI)||26, 234|
|RSP_2818||aroB||Putative 3-dehydroquinate synthase (NCBI)||84, 234|
|RSP_2896||RSP_2896||Multiple antibiotic transporter (NCBI)||15, 234|
|RSP_2939||RSP_2939||Predicted transcriptional regulator containing the HTH domain (NCBI)||67, 174|
|RSP_3216||RSP_3216||putative DNA repair exonuclease (NCBI)||20, 67|
|RSP_3313||RSP_3313||possible phage integrase family protein (NCBI)||67, 112|
|RSP_3330||sac1||Putative sodium/sulfate transporter, DASS family (NCBI)||67, 375|
|RSP_3367||RSP_3367||hypothetical protein (NCBI)||67, 145|
|RSP_3808||RSP_3808||hypothetical protein (NCBI)||67, 114|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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