Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Phage tail component protein X (NCBI)
Functional Annotations (1)
|P2-like prophage tail protein X||cog/ cog|
Regulation information for RSP_3358(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_3358
|P2-like prophage tail protein X||cog/ cog|
Module neighborhood information for RSP_3358
|Gene||Common Name||Description||Module membership|
|RSP_0297||RSP_0297||ABC branched chain amino acid transporter, ATPase subunit (NCBI)||103, 304|
|RSP_0410||RSP_0410||sensor diguanylate cyclase (GGDEF) (NCBI)||249, 282|
|RSP_0512||RSP_0512||multisensor hybrid histidine kinase (NCBI)||94, 304|
|RSP_0609||RSP_0609||hypothetical protein (NCBI)||146, 304|
|RSP_0856||btaA||S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase (NCBI)||6, 304|
|RSP_0938||RSP_0938||hypothetical protein (NCBI)||304, 313|
|RSP_1323||RSP_1323||hypothetical protein (NCBI)||116, 304|
|RSP_1458||RSP_1458||Putative DNA repair enzyme (NCBI)||244, 282|
|RSP_1500||RSP_1500||possible anti-sigma regulatory kinase (NCBI)||29, 304|
|RSP_1618||RSP_1618||hypothetical protein (NCBI)||62, 304|
|RSP_1651||RSP_1651||hypothetical protein (NCBI)||304, 313|
|RSP_1694||RSP_1694||Probable short-chain dehydrogenase/reductase (NCBI)||233, 304|
|RSP_1753||RSP_1753||hypothetical protein (NCBI)||304, 355|
|RSP_1774||RSP_1774||Putative glucose dehydrogenase B (NCBI)||138, 282|
|RSP_1816||RSP_1816||Mg chelatase-related protein (NCBI)||238, 282|
|RSP_1954||RSP_1954||hypothetical protein (NCBI)||155, 304|
|RSP_1981||RSP_1981||Deoxyribodipyrimidine photolyase (NCBI)||153, 282|
|RSP_2023||RSP_2023||hypothetical protein (NCBI)||229, 304|
|RSP_2068||RSP_2068||putative ClpP-like protease (NCBI)||235, 304|
|RSP_2070||RSP_2070||Putative Phage-related terminase (NCBI)||77, 304|
|RSP_2071||RSP_2071||hypothetical protein (NCBI)||77, 304|
|RSP_2072||RSP_2072||Putative Phage-related Holin protein (NCBI)||138, 282|
|RSP_2259||RSP_2259||Transmembrane protein (NCBI)||288, 304|
|RSP_2441||tlpS||Putative transducer like protein (NCBI)||304, 320|
|RSP_2672||RSP_2672||hypothetical protein (NCBI)||38, 282|
|RSP_2759||RSP_2759||hypothetical protein (NCBI)||246, 282|
|RSP_2761||RSP_2761||putative P2-like prophage tail protein X (NCBI)||246, 282|
|RSP_2769||RSP_2769||probable 5,10-methylenetetrahydrofolate reductase (NCBI)||238, 304|
|RSP_2789||RSP_2789||hypothetical protein (NCBI)||236, 282|
|RSP_2813||mttB||putative trimethylamine methyltransferase protein (NCBI)||73, 304|
|RSP_2867||rpoN4||Sigma-54 factor family protein (NCBI)||282, 292|
|RSP_3014||RSP_3014||putative aldolase protein (NCBI)||137, 304|
|RSP_3018||RSP_3018||putative acyl-CoA dehydrogenase (NCBI)||304, 370|
|RSP_3030||RSP_3030||ABC peptide/opine transporter, inner membrane subunit (NCBI)||193, 282|
|RSP_3032||RSP_3032||ABC peptide/opine transporter, ATPase subunit (NCBI)||193, 282|
|RSP_3033||RSP_3033||ABC peptide/opine transporter, ATPase subunit (NCBI)||193, 282|
|RSP_3034||RSP_3034||ABC peptide/opine transporter, periplasmic substrate-binding protein (NCBI)||193, 282|
|RSP_3096||RSP_3096||hypothetical protein (NCBI)||168, 304|
|RSP_3098||qoxB||QoxB, Quinol oxidase subunit II (NCBI)||168, 304|
|RSP_3103||RSP_3103||hypothetical protein (NCBI)||19, 304|
|RSP_3104||fdh||Putative Glutathione-dependent formaldehyde dehydrogenase (NCBI)||288, 304|
|RSP_3114||RSP_3114||hypothetical protein (NCBI)||77, 282|
|RSP_3204||RSP_3204||putative Oxidoreductase (NCBI)||124, 304|
|RSP_3258||RSP_3258||ABC peptide transporter, inner membrane subunit (NCBI)||236, 282|
|RSP_3283||RSP_3283||myo-inositol 2-dehydrogenase (NCBI)||116, 304|
|RSP_3357||gpU||putative phage tail protein U (NCBI)||40, 304|
|RSP_3358||gpX||Phage tail component protein X (NCBI)||282, 304|
|RSP_3359||gpD||Phage tail protein D (NCBI)||191, 282|
|RSP_3516||RSP_3516||ABC polyamine/opine transporter, ATPase subunit (NCBI)||31, 282|
|RSP_3519||RSP_3519||putative proline racemase (NCBI)||282, 331|
|RSP_3577||gvpG||putative gas vesicle synthesis protein (NCBI)||253, 304|
|RSP_3580||gvpJ||Gas vesicle protein GVPa (NCBI)||253, 282|
|RSP_3659||RSP_3659||Predicted amidohydrolase (NCBI)||288, 304|
|RSP_3682||RSP_3682||hypothetical protein (NCBI)||74, 304|
|RSP_3774||RSP_3774||hypothetical protein (NCBI)||304, 380|
|RSP_3775||RSP_3775||hypothetical protein (NCBI)||304, 380|
|RSP_3796||RSP_3796||hypothetical protein (NCBI)||253, 282|
|RSP_3814||RSP_3814||hypothetical protein (NCBI)||189, 304|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
- 2. Source gene
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