Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_3775(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_3775
|Gene||Common Name||Description||Module membership|
|RSP_0297||RSP_0297||ABC branched chain amino acid transporter, ATPase subunit (NCBI)||103, 304|
|RSP_0456||RSP_0456||hypothetical protein (NCBI)||62, 380|
|RSP_0512||RSP_0512||multisensor hybrid histidine kinase (NCBI)||94, 304|
|RSP_0609||RSP_0609||hypothetical protein (NCBI)||146, 304|
|RSP_0856||btaA||S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase (NCBI)||6, 304|
|RSP_0860||RSP_0860||hypothetical protein (NCBI)||245, 380|
|RSP_0938||RSP_0938||hypothetical protein (NCBI)||304, 313|
|RSP_1293||RSP_1293||putative acyl-carrier protein (NCBI)||267, 380|
|RSP_1323||RSP_1323||hypothetical protein (NCBI)||116, 304|
|RSP_1500||RSP_1500||possible anti-sigma regulatory kinase (NCBI)||29, 304|
|RSP_1618||RSP_1618||hypothetical protein (NCBI)||62, 304|
|RSP_1637||RSP_1637||hypothetical protein (NCBI)||313, 380|
|RSP_1651||RSP_1651||hypothetical protein (NCBI)||304, 313|
|RSP_1660||RSP_1660||putative ParB-like nuclease (NCBI)||88, 380|
|RSP_1662||RSP_1662||Integrase/recombinase (NCBI)||236, 380|
|RSP_1694||RSP_1694||Probable short-chain dehydrogenase/reductase (NCBI)||233, 304|
|RSP_1753||RSP_1753||hypothetical protein (NCBI)||304, 355|
|RSP_1954||RSP_1954||hypothetical protein (NCBI)||155, 304|
|RSP_1996||RSP_1996||Putative Competence protein (NCBI)||62, 380|
|RSP_2023||RSP_2023||hypothetical protein (NCBI)||229, 304|
|RSP_2034||RSP_2034||possible CAAX amino terminal protease family (NCBI)||235, 380|
|RSP_2043||RSP_2043||hypothetical protein (NCBI)||235, 380|
|RSP_2068||RSP_2068||putative ClpP-like protease (NCBI)||235, 304|
|RSP_2070||RSP_2070||Putative Phage-related terminase (NCBI)||77, 304|
|RSP_2071||RSP_2071||hypothetical protein (NCBI)||77, 304|
|RSP_2079||RSP_2079||hypothetical protein (NCBI)||29, 380|
|RSP_2259||RSP_2259||Transmembrane protein (NCBI)||288, 304|
|RSP_2372||RSP_2372||aldehyde dehydrogenase (NAD-dependent) (NCBI)||135, 380|
|RSP_2441||tlpS||Putative transducer like protein (NCBI)||304, 320|
|RSP_2769||RSP_2769||probable 5,10-methylenetetrahydrofolate reductase (NCBI)||238, 304|
|RSP_2813||mttB||putative trimethylamine methyltransferase protein (NCBI)||73, 304|
|RSP_2990||RSP_2990||hypothetical protein (NCBI)||235, 380|
|RSP_3014||RSP_3014||putative aldolase protein (NCBI)||137, 304|
|RSP_3018||RSP_3018||putative acyl-CoA dehydrogenase (NCBI)||304, 370|
|RSP_3096||RSP_3096||hypothetical protein (NCBI)||168, 304|
|RSP_3097||qoxA||QoxA, Quinol oxidase subunit I (NCBI)||19, 380|
|RSP_3098||qoxB||QoxB, Quinol oxidase subunit II (NCBI)||168, 304|
|RSP_3103||RSP_3103||hypothetical protein (NCBI)||19, 304|
|RSP_3104||fdh||Putative Glutathione-dependent formaldehyde dehydrogenase (NCBI)||288, 304|
|RSP_3204||RSP_3204||putative Oxidoreductase (NCBI)||124, 304|
|RSP_3245||RSP_3245||Possible transporter, Major facilitator superfamily (MFS) (NCBI)||176, 380|
|RSP_3283||RSP_3283||myo-inositol 2-dehydrogenase (NCBI)||116, 304|
|RSP_3286||iolB||Uncharacterized enzyme involved in inositol metabolism, IolB (NCBI)||246, 380|
|RSP_3357||gpU||putative phage tail protein U (NCBI)||40, 304|
|RSP_3358||gpX||Phage tail component protein X (NCBI)||282, 304|
|RSP_3417||RSP_3417||TonB dependent outer membrane ferrichrome-iron receptor (NCBI)||235, 380|
|RSP_3577||gvpG||putative gas vesicle synthesis protein (NCBI)||253, 304|
|RSP_3659||RSP_3659||Predicted amidohydrolase (NCBI)||288, 304|
|RSP_3682||RSP_3682||hypothetical protein (NCBI)||74, 304|
|RSP_3772||RSP_3772||hypothetical protein (NCBI)||247, 380|
|RSP_3773||RSP_3773||hypothetical protein (NCBI)||189, 380|
|RSP_3774||RSP_3774||hypothetical protein (NCBI)||304, 380|
|RSP_3775||RSP_3775||hypothetical protein (NCBI)||304, 380|
|RSP_3776||RSP_3776||hypothetical protein (NCBI)||183, 380|
|RSP_3798||RSP_3798||hypothetical protein (NCBI)||288, 380|
|RSP_3799||RSP_3799||hypothetical protein (NCBI)||288, 380|
|RSP_3814||RSP_3814||hypothetical protein (NCBI)||189, 304|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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