Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
hypothetical protein (NCBI)
Functional Annotations (1)
|DNA binding||go/ molecular_function|
Regulation information for RSP_3814(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_3814
|DNA binding||go/ molecular_function|
Module neighborhood information for RSP_3814
|Gene||Common Name||Description||Module membership|
|RSP_0216||RSP_0216||hypothetical protein (NCBI)||189, 213|
|RSP_0226||RSP_0226||Naringenin-chalcone synthase (NCBI)||62, 189|
|RSP_0227||RSP_0227||hypothetical protein (NCBI)||88, 189|
|RSP_0297||RSP_0297||ABC branched chain amino acid transporter, ATPase subunit (NCBI)||103, 304|
|RSP_0512||RSP_0512||multisensor hybrid histidine kinase (NCBI)||94, 304|
|RSP_0609||RSP_0609||hypothetical protein (NCBI)||146, 304|
|RSP_0856||btaA||S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase (NCBI)||6, 304|
|RSP_0938||RSP_0938||hypothetical protein (NCBI)||304, 313|
|RSP_1063||RSP_1063||Putative Cyclic-diGMP cyclase/phophodiesterase (NCBI)||19, 189|
|RSP_1323||RSP_1323||hypothetical protein (NCBI)||116, 304|
|RSP_1378||RSP_1378||hypothetical protein (NCBI)||175, 189|
|RSP_1500||RSP_1500||possible anti-sigma regulatory kinase (NCBI)||29, 304|
|RSP_1618||RSP_1618||hypothetical protein (NCBI)||62, 304|
|RSP_1619||RSP_1619||hypothetical protein (NCBI)||189, 235|
|RSP_1651||RSP_1651||hypothetical protein (NCBI)||304, 313|
|RSP_1694||RSP_1694||Probable short-chain dehydrogenase/reductase (NCBI)||233, 304|
|RSP_1753||RSP_1753||hypothetical protein (NCBI)||304, 355|
|RSP_1867||RSP_1867||transcriptional regulator, AsnC family (NCBI)||189, 356|
|RSP_1954||RSP_1954||hypothetical protein (NCBI)||155, 304|
|RSP_2023||RSP_2023||hypothetical protein (NCBI)||229, 304|
|RSP_2068||RSP_2068||putative ClpP-like protease (NCBI)||235, 304|
|RSP_2070||RSP_2070||Putative Phage-related terminase (NCBI)||77, 304|
|RSP_2071||RSP_2071||hypothetical protein (NCBI)||77, 304|
|RSP_2076||RSP_2076||hypothetical protein (NCBI)||189, 355|
|RSP_2259||RSP_2259||Transmembrane protein (NCBI)||288, 304|
|RSP_2441||tlpS||Putative transducer like protein (NCBI)||304, 320|
|RSP_2474||RSP_2474||hypothetical protein (NCBI)||189, 320|
|RSP_2477||RSP_2477||hypothetical protein (NCBI)||189, 193|
|RSP_2675||RSP_2675||hypothetical protein (NCBI)||73, 189|
|RSP_2769||RSP_2769||probable 5,10-methylenetetrahydrofolate reductase (NCBI)||238, 304|
|RSP_2813||mttB||putative trimethylamine methyltransferase protein (NCBI)||73, 304|
|RSP_2991||RSP_2991||hypothetical protein (NCBI)||14, 189|
|RSP_2998||RSP_2998||Hypothetical Terminase large subunit (NCBI)||14, 189|
|RSP_2999||RSP_2999||hypothetical protein (NCBI)||14, 189|
|RSP_3001||RSP_3001||Possible Endonuclease (NCBI)||14, 189|
|RSP_3014||RSP_3014||putative aldolase protein (NCBI)||137, 304|
|RSP_3018||RSP_3018||putative acyl-CoA dehydrogenase (NCBI)||304, 370|
|RSP_3096||RSP_3096||hypothetical protein (NCBI)||168, 304|
|RSP_3098||qoxB||QoxB, Quinol oxidase subunit II (NCBI)||168, 304|
|RSP_3103||RSP_3103||hypothetical protein (NCBI)||19, 304|
|RSP_3104||fdh||Putative Glutathione-dependent formaldehyde dehydrogenase (NCBI)||288, 304|
|RSP_3204||RSP_3204||putative Oxidoreductase (NCBI)||124, 304|
|RSP_3283||RSP_3283||myo-inositol 2-dehydrogenase (NCBI)||116, 304|
|RSP_3357||gpU||putative phage tail protein U (NCBI)||40, 304|
|RSP_3358||gpX||Phage tail component protein X (NCBI)||282, 304|
|RSP_3542||RSP_3542||hypothetical protein (NCBI)||73, 189|
|RSP_3577||gvpG||putative gas vesicle synthesis protein (NCBI)||253, 304|
|RSP_3651||RSP_3651||putative membrane protein (NCBI)||189, 233|
|RSP_3659||RSP_3659||Predicted amidohydrolase (NCBI)||288, 304|
|RSP_3682||RSP_3682||hypothetical protein (NCBI)||74, 304|
|RSP_3692||RSP_3692||Carbohydrate kinase, PfkB/Ribokinase (NCBI)||94, 189|
|RSP_3773||RSP_3773||hypothetical protein (NCBI)||189, 380|
|RSP_3774||RSP_3774||hypothetical protein (NCBI)||304, 380|
|RSP_3775||RSP_3775||hypothetical protein (NCBI)||304, 380|
|RSP_3812||RSP_3812||recombinase (NCBI)||103, 189|
|RSP_3813||parB||ParB-like nuclease (NCBI)||189, 288|
|RSP_3814||RSP_3814||hypothetical protein (NCBI)||189, 304|
|RSP_3816||RSP_3816||hypothetical protein (NCBI)||19, 189|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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