Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_2441(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_2441
|Gene||Common Name||Description||Module membership|
|RSP_0297||RSP_0297||ABC branched chain amino acid transporter, ATPase subunit (NCBI)||103, 304|
|RSP_0362||RSP_0362||hypothetical protein (NCBI)||38, 320|
|RSP_0512||RSP_0512||multisensor hybrid histidine kinase (NCBI)||94, 304|
|RSP_0609||RSP_0609||hypothetical protein (NCBI)||146, 304|
|RSP_0856||btaA||S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase (NCBI)||6, 304|
|RSP_0938||RSP_0938||hypothetical protein (NCBI)||304, 313|
|RSP_1323||RSP_1323||hypothetical protein (NCBI)||116, 304|
|RSP_1333||RSP_1333||hypothetical protein (NCBI)||320, 342|
|RSP_1334||RSP_1334||possible chemotactic signal-response protein CheL (NCBI)||320, 342|
|RSP_1335||RSP_1335||hypothetical protein (NCBI)||320, 342|
|RSP_1336||RSP_1336||Possible FlgD protein (NCBI)||320, 342|
|RSP_1500||RSP_1500||possible anti-sigma regulatory kinase (NCBI)||29, 304|
|RSP_1618||RSP_1618||hypothetical protein (NCBI)||62, 304|
|RSP_1651||RSP_1651||hypothetical protein (NCBI)||304, 313|
|RSP_1694||RSP_1694||Probable short-chain dehydrogenase/reductase (NCBI)||233, 304|
|RSP_1753||RSP_1753||hypothetical protein (NCBI)||304, 355|
|RSP_1954||RSP_1954||hypothetical protein (NCBI)||155, 304|
|RSP_2023||RSP_2023||hypothetical protein (NCBI)||229, 304|
|RSP_2027||RSP_2027||transcriptional regulator, LysR family (NCBI)||150, 320|
|RSP_2029||ucpA||Short-chain dehydrogenase/reductase (NCBI)||150, 320|
|RSP_2068||RSP_2068||putative ClpP-like protease (NCBI)||235, 304|
|RSP_2070||RSP_2070||Putative Phage-related terminase (NCBI)||77, 304|
|RSP_2071||RSP_2071||hypothetical protein (NCBI)||77, 304|
|RSP_2259||RSP_2259||Transmembrane protein (NCBI)||288, 304|
|RSP_2441||tlpS||Putative transducer like protein (NCBI)||304, 320|
|RSP_2442||mcpB||Methyl accepting chemotaxis protein, McpB (NCBI)||150, 320|
|RSP_2443||cheY5||putative Chemotaxis response regulator, CheY5 (NCBI)||40, 320|
|RSP_2444||RSP_2444||hypothetical protein (NCBI)||40, 320|
|RSP_2445||RSP_2445||putative Alpha amylase (NCBI)||40, 320|
|RSP_2446||RSP_2446||Putative trehalose synthase (NCBI)||40, 320|
|RSP_2448||glgB1||1,4-alpha-glucan branching enzyme (Glycogen branching enzyme) (NCBI)||40, 320|
|RSP_2449||RSP_2449||Putative glycosyl hydrolase (NCBI)||40, 320|
|RSP_2450||RSP_2450||putative Alpha-amylase (NCBI)||40, 320|
|RSP_2451||RSP_2451||putative 4-alpha-glucanotransferase (NCBI)||40, 320|
|RSP_2452||RSP_2452||Alpha amylase, catalytic domain/subdomain (NCBI)||40, 320|
|RSP_2474||RSP_2474||hypothetical protein (NCBI)||189, 320|
|RSP_2479||RSP_2479||putative phage host specificity protein (NCBI)||235, 320|
|RSP_2769||RSP_2769||probable 5,10-methylenetetrahydrofolate reductase (NCBI)||238, 304|
|RSP_2813||mttB||putative trimethylamine methyltransferase protein (NCBI)||73, 304|
|RSP_3014||RSP_3014||putative aldolase protein (NCBI)||137, 304|
|RSP_3018||RSP_3018||putative acyl-CoA dehydrogenase (NCBI)||304, 370|
|RSP_3065||RSP_3065||Putative transporter, Major facilitator superfamily (MFS) (NCBI)||77, 320|
|RSP_3096||RSP_3096||hypothetical protein (NCBI)||168, 304|
|RSP_3098||qoxB||QoxB, Quinol oxidase subunit II (NCBI)||168, 304|
|RSP_3103||RSP_3103||hypothetical protein (NCBI)||19, 304|
|RSP_3104||fdh||Putative Glutathione-dependent formaldehyde dehydrogenase (NCBI)||288, 304|
|RSP_3204||RSP_3204||putative Oxidoreductase (NCBI)||124, 304|
|RSP_3283||RSP_3283||myo-inositol 2-dehydrogenase (NCBI)||116, 304|
|RSP_3357||gpU||putative phage tail protein U (NCBI)||40, 304|
|RSP_3358||gpX||Phage tail component protein X (NCBI)||282, 304|
|RSP_3577||gvpG||putative gas vesicle synthesis protein (NCBI)||253, 304|
|RSP_3659||RSP_3659||Predicted amidohydrolase (NCBI)||288, 304|
|RSP_3682||RSP_3682||hypothetical protein (NCBI)||74, 304|
|RSP_3774||RSP_3774||hypothetical protein (NCBI)||304, 380|
|RSP_3775||RSP_3775||hypothetical protein (NCBI)||304, 380|
|RSP_3814||RSP_3814||hypothetical protein (NCBI)||189, 304|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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