Rv1816 Transcriptional regulator, TetR family

Rv1816 (Transcriptional regulator, TetR family) is predicted to be co-regulated in modules bicluster_0173 with residual 0.41 and bicluster_0443 with residual 0.45.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 11.00 and 12,000.00 for bicluster_0173 and 0.00 and 0.40 for bicluster_0443 respectively.

These modules are enriched for following go terms: cellular biosynthetic process, organic substance biosynthetic process, cytoplasm, RNA binding.

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Displaying 31 - 40 of 143
Gene Target Differential Expression Distance Expression pvalue Type
LSU ribosomal protein L2p (L8e)
No -27 -0.1 0.897749 Primary.TSS
LSU ribosomal protein L5p (L11e)
No -130 -0.04 0.947891 CDS
LSU ribosomal protein L30p (L7e)
No 66 -0.17 0.813303 CDS
LSU ribosomal protein L15p (L27Ae)
No -131 -0.07 0.941678 CDS
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
No -2 0.68 0.246856 CDS
Inner membrane component of tripartite multidrug resistance system
No 54 0.15 0.810948 Antisense.TSS
probable sseC protein
No -65 0.08 0.93012 CDS
Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1 (as in PMID19099556)
No -136 -0.19 0.863848 Primary.TSS
COG4861: Uncharacterized protein conserved in bacteria
No -129 -0.04 0.959021 CDS
POSSIBLE CONSERVED EXPORTED PROTEIN
No -117 0.3 0.515946 CDS
not assigned to any KEGG Pathway.
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 12.07 U
D3I 3 3 3.83 12.26 I
D3U 3 3 3.83 11.96 U
D5I 9 5 6.00 12.69 I
D5U 17 5 6.00 12.43 U
D7I 18 7 8.14 12.30 I
D7U 19 7 8.14 11.73 U
D14I 4 14 15.63 13.41 I
D14U 4 14 15.63 12.52 U
D17I 3 17 19.15 13.71 I
D17U 3 17 19.15 12.66 U
D21I 4 21 23.23 13.23 I
D21U 4 21 23.23 12.39 U
D24I 3 24 26.60 13.29 I
D24U 3 24 26.60 12.22 U
D28I 4 28 30.61 12.79 I
D28U 4 28 30.61 12.00 U