Rv1816 Transcriptional regulator, TetR family

Rv1816 (Transcriptional regulator, TetR family) is predicted to be co-regulated in modules bicluster_0173 with residual 0.41 and bicluster_0443 with residual 0.45.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 11.00 and 12,000.00 for bicluster_0173 and 0.00 and 0.40 for bicluster_0443 respectively.

These modules are enriched for following go terms: cellular biosynthetic process, organic substance biosynthetic process, cytoplasm, RNA binding.

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Displaying 41 - 50 of 143
Gene Target Differential Expression Distance Expression pvalue Type
No -109 -0.08 0.943381 Primary.TSS
Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)
No 31 -0.37 0.107394 Primary.TSS
No 25 -0.13 0.89619 Internal.TSS
Cu+ P-type ATPase
No 25 0.1 0.888663 Primary.TSS
PUTATIVE LIPOPROTEIN LPQV
No -72 0.75 0.0580437 CDS
Induced -100 1.15 0.00000293 Primary.TSS
Fatty acid desaturase occurring in virulence cluster
No -59 0 0.999297 Primary.TSS
Possible peroxidase bpoB (Non-haem peroxidase) (EC 1.11.1.-)
No -10 0.14 0.762611 Internal.TSS
Possible peroxidase bpoB (Non-haem peroxidase) (EC 1.11.1.-)
No -52 0.14 0.762611 CDS
Probable epoxide hydrolase ephC (EC 3.3.2.9)
No -129 0.26 0.600648 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 12.07 U
D3I 3 3 3.83 12.26 I
D3U 3 3 3.83 11.96 U
D5I 9 5 6.00 12.69 I
D5U 17 5 6.00 12.43 U
D7I 18 7 8.14 12.30 I
D7U 19 7 8.14 11.73 U
D14I 4 14 15.63 13.41 I
D14U 4 14 15.63 12.52 U
D17I 3 17 19.15 13.71 I
D17U 3 17 19.15 12.66 U
D21I 4 21 23.23 13.23 I
D21U 4 21 23.23 12.39 U
D24I 3 24 26.60 13.29 I
D24U 3 24 26.60 12.22 U
D28I 4 28 30.61 12.79 I
D28U 4 28 30.61 12.00 U