Rv1816 Transcriptional regulator, TetR family

Rv1816 (Transcriptional regulator, TetR family) is predicted to be co-regulated in modules bicluster_0173 with residual 0.41 and bicluster_0443 with residual 0.45.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 11.00 and 12,000.00 for bicluster_0173 and 0.00 and 0.40 for bicluster_0443 respectively.

These modules are enriched for following go terms: cellular biosynthetic process, organic substance biosynthetic process, cytoplasm, RNA binding.

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Displaying 71 - 80 of 143
Gene Target Differential Expression Distance Expression pvalue Type
No 13 -0.01 0.986832 CDS
Undecaprenyl-diphosphatase (EC 3.6.1.27)
No -147 -0.17 0.774497 Primary.TSS
No -147 -0.19 0.851941 Internal.TSS
No 67 0.03 0.981936 CDS
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)
No -51 0.38 0.208705 Internal.TSS
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)
No -70 0.38 0.208705 Antisense.TSS
Carotene biosynthesis associated membrane protein
No -91 -0.34 0.120346 CDS
Mobile element protein
No -109 -0.1 0.90523 CDS
Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
No 45 0.09 0.874626 Internal.TSS
Possible membrane protein
No 39 0.13 0.704948 CDS
not assigned to any KEGG Pathway.
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 12.07 U
D3I 3 3 3.83 12.26 I
D3U 3 3 3.83 11.96 U
D5I 9 5 6.00 12.69 I
D5U 17 5 6.00 12.43 U
D7I 18 7 8.14 12.30 I
D7U 19 7 8.14 11.73 U
D14I 4 14 15.63 13.41 I
D14U 4 14 15.63 12.52 U
D17I 3 17 19.15 13.71 I
D17U 3 17 19.15 12.66 U
D21I 4 21 23.23 13.23 I
D21U 4 21 23.23 12.39 U
D24I 3 24 26.60 13.29 I
D24U 3 24 26.60 12.22 U
D28I 4 28 30.61 12.79 I
D28U 4 28 30.61 12.00 U