Rv1816 Transcriptional regulator, TetR family

Rv1816 (Transcriptional regulator, TetR family) is predicted to be co-regulated in modules bicluster_0173 with residual 0.41 and bicluster_0443 with residual 0.45.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 11.00 and 12,000.00 for bicluster_0173 and 0.00 and 0.40 for bicluster_0443 respectively.

These modules are enriched for following go terms: cellular biosynthetic process, organic substance biosynthetic process, cytoplasm, RNA binding.

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Displaying 11 - 20 of 143
Gene Target Differential Expression Distance Expression pvalue Type
Ribonucleotide-diphosphate reductase subunit beta (EC 1.17.4.1)
No -5 -0.05 0.967071 CDS
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
No 47 -0.05 0.971241 Internal.TSS
Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)
No 53 -0.04 0.94382 Primary.TSS
PE family protein
No 11 0.21 0.711257 CDS
13E12 repeat family protein
No -107 -0.04 0.965291 Primary.TSS
Alanine transaminase (EC 2.6.1.2)
No -56 0.05 0.927422 Internal.TSS
No -122 -0.27 0.817844 Internal.TSS
No 18 0.27 0.26334 CDS
Possible membrane protein
No 20 0.04 0.956089 CDS
No -37 0.33 0.137718 Internal.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 12.07 U
D3I 3 3 3.83 12.26 I
D3U 3 3 3.83 11.96 U
D5I 9 5 6.00 12.69 I
D5U 17 5 6.00 12.43 U
D7I 18 7 8.14 12.30 I
D7U 19 7 8.14 11.73 U
D14I 4 14 15.63 13.41 I
D14U 4 14 15.63 12.52 U
D17I 3 17 19.15 13.71 I
D17U 3 17 19.15 12.66 U
D21I 4 21 23.23 13.23 I
D21U 4 21 23.23 12.39 U
D24I 3 24 26.60 13.29 I
D24U 3 24 26.60 12.22 U
D28I 4 28 30.61 12.79 I
D28U 4 28 30.61 12.00 U