Rv1816 Transcriptional regulator, TetR family

Rv1816 (Transcriptional regulator, TetR family) is predicted to be co-regulated in modules bicluster_0173 with residual 0.41 and bicluster_0443 with residual 0.45.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 11.00 and 12,000.00 for bicluster_0173 and 0.00 and 0.40 for bicluster_0443 respectively.

These modules are enriched for following go terms: cellular biosynthetic process, organic substance biosynthetic process, cytoplasm, RNA binding.

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Displaying 51 - 60 of 143
Gene Target Differential Expression Distance Expression pvalue Type
Transmembrane transport protein MmpL13b
No -134 0.16 0.767272 CDS
HAD-superfamily subfamily IIA hydrolase, hypothetical 2
No 60 0.19 0.698677 CDS
Lipoprotein LprA
No 60 0.41 0.668923 Primary.TSS
Putative esterase
Induced -83 0.88 0.0226624 CDS
Cysteine synthase B (EC 2.5.1.47)
No -1 0.26 0.415 CDS
Anti-sigma factor antagonist
No -114 0.08 0.95486 Primary.TSS
Chalcone synthase (EC 2.3.1.74)
No -61 0.07 0.888663 CDS
POSSIBLE CONSERVED INTEGRAL MEMBRANE PROTEIN
No -83 -0.09 0.879531 Internal.TSS
Iron-sulfur cluster assembly protein SufB @ intein-containing
No 42 0.31 0.571308 CDS
No -107 -0.05 0.964645 CDS
not assigned to any KEGG Pathway.
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 12.07 U
D3I 3 3 3.83 12.26 I
D3U 3 3 3.83 11.96 U
D5I 9 5 6.00 12.69 I
D5U 17 5 6.00 12.43 U
D7I 18 7 8.14 12.30 I
D7U 19 7 8.14 11.73 U
D14I 4 14 15.63 13.41 I
D14U 4 14 15.63 12.52 U
D17I 3 17 19.15 13.71 I
D17U 3 17 19.15 12.66 U
D21I 4 21 23.23 13.23 I
D21U 4 21 23.23 12.39 U
D24I 3 24 26.60 13.29 I
D24U 3 24 26.60 12.22 U
D28I 4 28 30.61 12.79 I
D28U 4 28 30.61 12.00 U