Rv3249c Transcriptional regulator, TetR family

Rv3249c (Transcriptional regulator, TetR family) is predicted to be co-regulated in modules bicluster_0063 with residual 0.56 and bicluster_0167 with residual 0.51.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.01 and 37.00 for bicluster_0063 and 0.00 and 49.00 for bicluster_0167 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 111 - 120 of 129
Gene Target Differential Expression Distance Expression pvalue Type
No 44 -0.02 0.983263 Primary.TSS
No 60 0.08 0.878894 Internal.TSS
Lipid-transfer protein
No 60 0.04 0.937606 Primary.TSS
No 17 -0.09 0.813761 Primary.TSS
PPE family protein
No -147 -0.02 0.947186 Primary.TSS
Possible electron transfer protein FdxB (EC 1.-.-.-)
Induced 3 2.37 3.25e-21 CDS
Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)
No 40 0 0.99568 Antisense.TSS
Adenylate cyclase (EC 4.6.1.1)
No -74 -0.08 0.815465 CDS
Adenylate cyclase (EC 4.6.1.1)
No -134 -0.08 0.815465 Internal.TSS
Septum site-determining protein MinD @ possible CpaE
No 68 -0.33 0.760172 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 13.44 U
D3I 3 3 3.83 13.39 I
D3U 3 3 3.83 13.06 U
D5I 9 5 6.00 13.87 I
D5U 17 5 6.00 13.73 U
D7I 18 7 8.14 13.67 I
D7U 19 7 8.14 13.15 U
D14I 4 14 15.63 11.79 I
D14U 4 14 15.63 11.70 U
D17I 3 17 19.15 10.81 I
D17U 3 17 19.15 10.88 U
D21I 4 21 23.23 10.36 I
D21U 4 21 23.23 11.06 U
D24I 3 24 26.60 9.00 I
D24U 3 24 26.60 9.91 U
D28I 4 28 30.61 8.76 I
D28U 4 28 30.61 10.03 U