Organism : Bacillus subtilis | Module List :
Regulation information for BSU17070(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU17070
|Gene||Common Name||Description||Module membership|
|BSU00400||yabE||putative cell wall shaping enzyme (RefSeq)||53, 246|
|BSU02130||glpQ||glycerophosphoryl diester phosphodiesterase (RefSeq)||285, 411|
|BSU02140||glpT||glycerol-3-phosphate permease (RefSeq)||285, 411|
|BSU02170||ybfB||putative carboxylate transporter (RefSeq)||84, 285|
|BSU02380||ybgB||hypothetical protein (RefSeq)||206, 285|
|BSU02730||natK||two-component sensor histidine kinase [NatR] (RefSeq)||130, 246|
|BSU02740||natR||two-component response regulator [NatK] (RefSeq)||130, 246|
|BSU02750||natA||Na+ ABC efflux transporter (ATP-binding protein) (RefSeq)||130, 246|
|BSU02760||natB||Na+ ABC efflux transporter (permease) (RefSeq)||130, 246|
|BSU04440||dctB||C4-dicarboxylate binding protein (RefSeq)||246, 361|
|BSU04450||dctS||two-component sensor histidine kinase (RefSeq)||246, 361|
|BSU04460||dctR||two-component response regulator (RefSeq)||246, 361|
|BSU05720||ydhE||putative glycosyltransferase (RefSeq)||285, 360|
|BSU07230||yetM||hypothetical protein (RefSeq)||285, 305|
|BSU08120||yfjF||hypothetical protein (RefSeq)||55, 246|
|BSU08360||yfiQ||putative membrane component involved in biofilm formation (RefSeq)||115, 285|
|BSU08780||ygaJ||putative peptidase (RefSeq)||285, 311|
|BSU09040||yhcD||hypothetical protein (RefSeq)||86, 285|
|BSU09150||yhcN||putative lipoprotein (RefSeq)||43, 246|
|BSU09720||yheH||ABC transporter (ATP-binding protein) involved in the signalling pathway that activates KinA during sporulation initiation (RefSeq)||84, 285|
|BSU10180||yhfC||putative integral membrane protein, putative chaperone (RefSeq)||74, 285|
|BSU10460||yhjC||hypothetical protein (RefSeq)||285, 311|
|BSU10500||yhjG||hypothetical protein (RefSeq)||168, 285|
|BSU12490||yjqC||putative PBSX phage manganese-containing catalase (RefSeq)||231, 246|
|BSU17070||ymcC||putative integral inner membrane protein (RefSeq)||246, 285|
|BSU17640||alrB||alanine racemase (RefSeq)||246, 301|
|BSU17820||yndL||putative phage-related replication protein (RefSeq)||47, 285|
|BSU18860||yozH||hypothetical protein (RefSeq)||246, 411|
|BSU22920||ypeB||spore membrane component (RefSeq)||246, 357|
|BSU22930||sleB||spore cortex-lytic enzyme (RefSeq)||246, 357|
|BSU23390||spoVAF||stage V sporulation protein AF (RefSeq)||246, 357|
|BSU24190||yqiI||putative N-acetylmuramoyl-L-alanine amidase (RefSeq)||52, 285|
|BSU24230||spoIVB||regulatory membrane-associated serine protease (RefSeq)||246, 357|
|BSU25080||yqfX||hypothetical protein (RefSeq)||43, 246|
|BSU25540||gpr||germination protease (RefSeq)||43, 285|
|BSU28670||ysfB||putative regulator (RefSeq)||285, 312|
|BSU32230||yuxL||putative acylaminoacyl-peptidase (RefSeq)||231, 285|
|BSU32720||yurZ||hypothetical protein (RefSeq)||246, 301|
|BSU32980||yusZ||short chain dehydrogenase (RefSeq)||52, 285|
|BSU36100||ywrD||putative gamma-glutamyltransferase (RefSeq)||241, 246|
|BSU36150||ywqN||putative oxidoreductase (RefSeq)||84, 285|
|BSU37190||clsB||cardiolipin synthetase (RefSeq)||22, 246|
|BSU38420||sacY||transcriptional antiterminator (RefSeq)||241, 246|
|BSU38460||tyrZ||tyrosyl-tRNA synthetase (RefSeq)||71, 285|
|BSU39420||deoC||deoxyribose-phosphate aldolase (RefSeq)||168, 285|
|BSU40240||yycS||putative integrase/transposase (RefSeq)||44, 285|
|BSU40320||argI||arginase (RefSeq)||229, 246|
|BSU40330||rocE||arginine/ornithine/gamma-aminobutyrate permease (RefSeq)||229, 246|
|BSU40850||maa||maltose O-acetyltransferase (RefSeq)||257, 285|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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