Organism : Bacillus subtilis | Module List :
Regulation information for BSU39029(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU39029
|Gene||Common Name||Description||Module membership|
|BSU00080||yaaC||hypothetical protein (RefSeq)||105, 150|
|BSU00090||guaB||inosine 5'-monophosphate dehydrogenase (RefSeq)||42, 150|
|BSU00400||yabE||putative cell wall shaping enzyme (RefSeq)||53, 246|
|BSU00730||cysK||cysteine synthase (RefSeq)||80, 150|
|BSU02730||natK||two-component sensor histidine kinase [NatR] (RefSeq)||130, 246|
|BSU02740||natR||two-component response regulator [NatK] (RefSeq)||130, 246|
|BSU02750||natA||Na+ ABC efflux transporter (ATP-binding protein) (RefSeq)||130, 246|
|BSU02760||natB||Na+ ABC efflux transporter (permease) (RefSeq)||130, 246|
|BSU03240||ycgQ||hypothetical protein (RefSeq)||150, 233|
|BSU04440||dctB||C4-dicarboxylate binding protein (RefSeq)||246, 361|
|BSU04450||dctS||two-component sensor histidine kinase (RefSeq)||246, 361|
|BSU04460||dctR||two-component response regulator (RefSeq)||246, 361|
|BSU06020||groES||co-chaperonin GroES (RefSeq)||39, 150|
|BSU06030||groEL||chaperonin GroEL (RefSeq)||39, 150|
|BSU06120||ydjB||hypothetical protein (RefSeq)||150, 409|
|BSU08120||yfjF||hypothetical protein (RefSeq)||55, 246|
|BSU09080||yhcH||putative ABC transporter (ATP-binding protein) (RefSeq)||150, 233|
|BSU09150||yhcN||putative lipoprotein (RefSeq)||43, 246|
|BSU11030||yitL||putative RNA-binding protein (RefSeq)||150, 247|
|BSU12490||yjqC||putative PBSX phage manganese-containing catalase (RefSeq)||231, 246|
|BSU13250||ykoG||two-component response regulator [YkoH] (RefSeq)||146, 150|
|BSU13260||ykoH||two-component sensor histidine kinase [YkoG] (RefSeq)||146, 150|
|BSU13270||ykoI||hypothetical protein (RefSeq)||146, 150|
|BSU13480||ykrK||hypothetical protein (RefSeq)||150, 239|
|BSU14310||moaD||molybdopterin synthase (small subunit) (RefSeq)||128, 150|
|BSU17070||ymcC||putative integral inner membrane protein (RefSeq)||246, 285|
|BSU17640||alrB||alanine racemase (RefSeq)||246, 301|
|BSU18300||ppsE||plipastatin synthetase (RefSeq)||98, 150|
|BSU18660||yoaM||hypothetical protein (RefSeq)||19, 150|
|BSU18800||penP||beta-lactamase precursor (RefSeq)||150, 274|
|BSU18860||yozH||hypothetical protein (RefSeq)||246, 411|
|BSU22140||kduD||2-deoxy-D-gluconate 3-dehydrogenase (RefSeq)||150, 168|
|BSU22920||ypeB||spore membrane component (RefSeq)||246, 357|
|BSU22930||sleB||spore cortex-lytic enzyme (RefSeq)||246, 357|
|BSU23390||spoVAF||stage V sporulation protein AF (RefSeq)||246, 357|
|BSU24230||spoIVB||regulatory membrane-associated serine protease (RefSeq)||246, 357|
|BSU25080||yqfX||hypothetical protein (RefSeq)||43, 246|
|BSU25420||yqeW||putative Na+/anion cotransporter (RefSeq)||86, 150|
|BSU27250||yrhB||cystathionine beta-lyase (RefSeq)||80, 150|
|BSU27260||mccA||cystathionine beta-synthase for the reverse transsulfuration pathway (RefSeq)||80, 150|
|BSU27280||yrrT||putative AdoMet-dependent methyltransferase (RefSeq)||150, 195|
|BSU27570||yrzK||hypothetical protein (RefSeq)||150, 239|
|BSU29400||ytlI||transcriptional regulator (LysR family) (RefSeq)||150, 333|
|BSU31460||kapB||factor required for KinB signal transduction and activation of the phosphorelay to sporulation (RefSeq)||145, 150|
|BSU32720||yurZ||hypothetical protein (RefSeq)||246, 301|
|BSU36100||ywrD||putative gamma-glutamyltransferase (RefSeq)||241, 246|
|BSU37190||clsB||cardiolipin synthetase (RefSeq)||22, 246|
|BSU38340||ywbF||putative sugar permease (RefSeq)||19, 150|
|BSU38420||sacY||transcriptional antiterminator (RefSeq)||241, 246|
|BSU40320||argI||arginase (RefSeq)||229, 246|
|BSU40330||rocE||arginine/ornithine/gamma-aminobutyrate permease (RefSeq)||229, 246|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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