Organism : Bacillus subtilis | Module List :
Regulation information for BSU23350(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU23350
|Gene||Common Name||Description||Module membership|
|BSU00430||yabG||sporulation-specific protease (RefSeq)||280, 281|
|BSU07280||yfnG||putative CDP-sugar-dehydratase/epimerase (RefSeq)||277, 281|
|BSU07290||yfnF||putative glycosyltransferase (RefSeq)||277, 281|
|BSU07300||yfnE||putative glycosyltransferase (complex carbohydrate synthase) (RefSeq)||277, 281|
|BSU14250||yknT||hypothetical protein (RefSeq)||224, 280|
|BSU14970||ylbD||hypothetical protein (RefSeq)||280, 281|
|BSU14980||ylbE||hypothetical protein (RefSeq)||99, 280|
|BSU15030||ylbJ||putative factor required for spore cortex formation (RefSeq)||16, 280|
|BSU15810||spoVM||stage V sporulation protein M (RefSeq)||280, 286|
|BSU18280||yngK||hypothetical protein (RefSeq)||174, 280|
|BSU19600||yodH||putative S-adenosylmethionine-dependent methyltransferase (RefSeq)||280, 411|
|BSU19610||yodI||hypothetical protein (RefSeq)||280, 281|
|BSU19670||yodN||hypothetical protein (RefSeq)||280, 281|
|BSU19770||cgeC||protein involved in maturation of the outermost layer of the spore (RefSeq)||41, 281|
|BSU22240||ypqA||hypothetical protein (RefSeq)||21, 280|
|BSU23350||ypzD||hypothetical protein (RefSeq)||280, 281|
|BSU25120||yqfT||hypothetical protein (RefSeq)||239, 280|
|BSU25350||yqfD||stage IV sporulation protein (RefSeq)||16, 280|
|BSU25360||yqfC||hypothetical protein (RefSeq)||162, 280|
|BSU26740||cypA||cytochrome P450 (RefSeq)||280, 307|
|BSU28110||spoVID||morphogenetic spore protein (stage VI sporulation) (RefSeq)||224, 280|
|BSU29240||ytrI||protein involved in sporulation (RefSeq)||280, 286|
|BSU30890||ytxO||hypothetical protein (RefSeq)||21, 281|
|BSU30900||cotS||spore coat protein (RefSeq)||21, 281|
|BSU30910||cotSA||spore coat protein (RefSeq)||21, 281|
|BSU30920||cotI||spore coat protein (RefSeq)||21, 281|
|BSU31140||cdoA||cysteine dioxygenase (RefSeq)||183, 280|
|BSU31290||yugT||putative oligo-1,6-glucosidase (RefSeq)||126, 280|
|BSU32650||yurS||hypothetical protein (RefSeq)||280, 307|
|BSU34530||cotR||spore coat protein assembly factor CotR (RefSeq)||281, 326|
|BSU36030||ywrK||putative Na+/H+ antiporter (RefSeq)||281, 326|
|BSU37810||spsL||nucleotide sugar epimerase (RefSeq)||41, 281|
|BSU37820||spsK||putative dTDP-4-dehydrorhamnose reductase (RefSeq)||41, 281|
|BSU37830||spsJ||putative dTDP-glucose 4,6-dehydratase (RefSeq)||41, 281|
|BSU37840||spsI||putative dTDP-glucose pyrophosphorylase (RefSeq)||41, 281|
|BSU37850||spsG||putative glycosyltransferase (RefSeq)||41, 281|
|BSU37860||spsF||putative glycosyltransferase (RefSeq)||41, 281|
|BSU37880||spsD||putative TDP-glycosamine N-acetyltransferase (RefSeq)||41, 281|
|BSU37890||spsC||putative glutamine-dependent sugar transaminase (RefSeq)||41, 281|
|BSU37900||spsB||putative dTDP glycosyl/glycerophosphate transferase (RefSeq)||41, 281|
|BSU37910||spsA||spore coat dTDP-glycosyltransferase (RefSeq)||41, 281|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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