Organism : Bacillus subtilis | Module List :
Regulation information for BSU23540(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU23540
|Gene||Common Name||Description||Module membership|
|BSU01520||ybaK||putative alkylated deoxynucleotide triphosphohydrolase (RefSeq)||129, 174|
|BSU03680||yclG||putative uronase (RefSeq)||129, 156|
|BSU04170||ydaB||putative acyl-CoA ligase (RefSeq)||129, 387|
|BSU04320||ydaO||putative metabolite transporter (RefSeq)||38, 270|
|BSU05690||ydhB||putative integral inner membrane protein (RefSeq)||270, 294|
|BSU05700||ydhC||putative transcriptional regulator (GntR family) (RefSeq)||270, 323|
|BSU06790||yeeD||hypothetical protein (RefSeq)||129, 178|
|BSU06800||yezA||hypothetical protein (RefSeq)||129, 311|
|BSU07130||lplD||putative glycosidase (RefSeq)||33, 129|
|BSU07140||yetF||hypothetical protein (RefSeq)||129, 304|
|BSU07400||yfmO||metal efflux transporter (RefSeq)||161, 270|
|BSU07660||yflJ||hypothetical protein (RefSeq)||123, 129|
|BSU08400||yfiU||putative efflux transporter (RefSeq)||270, 327|
|BSU08530||yfhH||hypothetical protein (RefSeq)||94, 270|
|BSU14460||ykpC||hypothetical protein (RefSeq)||129, 286|
|BSU17260||aprX||alkaline serine protease (RefSeq)||129, 178|
|BSU18690||yoaP||hypothetical protein (RefSeq)||64, 129|
|BSU18700||yoaQ||hypothetical protein (RefSeq)||129, 411|
|BSU18960||yozM||putative bacteriophage protein (RefSeq)||129, 181|
|BSU19800||phy||phytase (RefSeq)||129, 231|
|BSU21810||dfrA||dihydrofolate reductase (RefSeq)||228, 270|
|BSU21820||thyA||thymidylate synthase (RefSeq)||270, 301|
|BSU23540||yqkK||hypothetical protein (RefSeq)||129, 270|
|BSU23700||yqjX||hypothetical protein (RefSeq)||161, 270|
|BSU23710||yqjW||DNA polymerase IV (RefSeq)||161, 270|
|BSU23720||yqzH||hypothetical protein (RefSeq)||159, 270|
|BSU26060||yqbM||hypothetical protein (RefSeq)||129, 130|
|BSU26130||yqbF||hypothetical protein; skin element (RefSeq)||129, 238|
|BSU26150||yqbD||putative DNA wielding protein; skin element (RefSeq)||129, 206|
|BSU26190||yqaT||putative phage-related terminase large subunit; skin element (RefSeq)||238, 270|
|BSU26360||yqaD||conserved hypothetical protein; skin element (RefSeq)||52, 129|
|BSU26410||yrkR||phosphate-starvation-inducible protein PsiE (RefSeq)||44, 129|
|BSU26420||yrkQ||two-component sensor histidine kinase [YrkP] (RefSeq)||129, 270|
|BSU26430||yrkP||two-component response regulator [YrkQ] (RefSeq)||44, 129|
|BSU26440||yrkO||putative integral inner membrane protein (RefSeq)||44, 129|
|BSU26540||yrkE||hypothetical protein (RefSeq)||71, 270|
|BSU26600||bltD||spermine/spermidine acetyltransferase (RefSeq)||115, 129|
|BSU26660||yrdN||putative tautomerase (RefSeq)||129, 270|
|BSU26670||gltR||transcriptional regulator (LysR family) (RefSeq)||38, 270|
|BSU26680||yrdK||hypothetical protein (RefSeq)||89, 270|
|BSU26810||yrpC||glutamate racemase (RefSeq)||270, 310|
|BSU27140||oatA||peptidoglycan O-acetyltransferase (RefSeq)||38, 270|
|BSU28180||ysxD||putative integral inner membrane protein (RefSeq)||151, 270|
|BSU29000||nrdR||transcriptional regulator NrdR (RefSeq)||94, 270|
|BSU32140||paiB||putative enzyme (RefSeq)||241, 270|
|BSU37040||ywkB||putative transporter (RefSeq)||129, 387|
|BSU39990||yxaF||transcriptional regulator (RefSeq)||38, 270|
|BSU40010||yxaD||putative transcriptional regulator (MarR family) (RefSeq)||161, 270|
|BSU40710||yybA||putative transcriptional regulator (MarR family) (RefSeq)||270, 310|
|BSU40720||yyaT||putative acetyltransferase (RefSeq)||151, 270|
|BSU40730||yyaS||putative integral inner membrane protein (RefSeq)||151, 270|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Regulation tab for each gene includes regulatory influences such as environmental factors or transcription factors or their combinations identified by regulatory network inference algorithms.
If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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