Organism : Bacillus subtilis | Module List :
Regulation information for BSU06790(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU06790
|Gene||Common Name||Description||Module membership|
|BSU01520||ybaK||putative alkylated deoxynucleotide triphosphohydrolase (RefSeq)||129, 174|
|BSU02190||ybfF||hypothetical protein (RefSeq)||178, 200|
|BSU03060||lctP||L-lactate permease (RefSeq)||178, 238|
|BSU03350||yciB||putative metal uptake system lipoprotein (RefSeq)||178, 406|
|BSU03680||yclG||putative uronase (RefSeq)||129, 156|
|BSU04170||ydaB||putative acyl-CoA ligase (RefSeq)||129, 387|
|BSU05480||ydfN||putative oxidoreductase (RefSeq)||107, 178|
|BSU05490||ydfO||putative dioxygenase (RefSeq)||52, 178|
|BSU05500||ydfP||putative membrane bound oxidoreductase (RefSeq)||52, 178|
|BSU05640||ydgG||putative transcriptional regulator (MarR family) (RefSeq)||38, 178|
|BSU05650||ydgH||putative membrane component (RefSeq)||38, 178|
|BSU06740||yefB||putative site-specific recombinase / invertase (RefSeq)||178, 199|
|BSU06790||yeeD||hypothetical protein (RefSeq)||129, 178|
|BSU06800||yezA||hypothetical protein (RefSeq)||129, 311|
|BSU07130||lplD||putative glycosidase (RefSeq)||33, 129|
|BSU07140||yetF||hypothetical protein (RefSeq)||129, 304|
|BSU07660||yflJ||hypothetical protein (RefSeq)||123, 129|
|BSU08230||catD||catechol-2,3-dioxygenase membrane subunit (RefSeq)||178, 307|
|BSU08810||senS||transcriptional regulator (activator) (RefSeq)||178, 336|
|BSU08840||ssuA||aliphatic sulfonate ABC transporter (binding lipoprotein) (RefSeq)||178, 336|
|BSU09810||yhaZ||hypothetical protein (RefSeq)||178, 200|
|BSU10160||yhgE||putative methyl-accepting protein (RefSeq)||178, 301|
|BSU10470||yhjD||hypothetical protein (RefSeq)||96, 178|
|BSU13040||hmp||nitric oxide dioxygenase (RefSeq)||174, 178|
|BSU13440||ykoY||putative transporter (RefSeq)||178, 294|
|BSU14460||ykpC||hypothetical protein (RefSeq)||129, 286|
|BSU17260||aprX||alkaline serine protease (RefSeq)||129, 178|
|BSU17840||yndN||fosfomycin resistance protein FosB (RefSeq)||178, 379|
|BSU18690||yoaP||hypothetical protein (RefSeq)||64, 129|
|BSU18700||yoaQ||hypothetical protein (RefSeq)||129, 411|
|BSU18960||yozM||putative bacteriophage protein (RefSeq)||129, 181|
|BSU19800||phy||phytase (RefSeq)||129, 231|
|BSU21060||yonK||conserved hypothetical protein; phage SPbeta (RefSeq)||18, 178|
|BSU23540||yqkK||hypothetical protein (RefSeq)||129, 270|
|BSU25990||yqbS||conserved hypothetical protein; skin element (RefSeq)||178, 301|
|BSU26060||yqbM||hypothetical protein (RefSeq)||129, 130|
|BSU26130||yqbF||hypothetical protein; skin element (RefSeq)||129, 238|
|BSU26150||yqbD||putative DNA wielding protein; skin element (RefSeq)||129, 206|
|BSU26360||yqaD||conserved hypothetical protein; skin element (RefSeq)||52, 129|
|BSU26410||yrkR||phosphate-starvation-inducible protein PsiE (RefSeq)||44, 129|
|BSU26420||yrkQ||two-component sensor histidine kinase [YrkP] (RefSeq)||129, 270|
|BSU26430||yrkP||two-component response regulator [YrkQ] (RefSeq)||44, 129|
|BSU26440||yrkO||putative integral inner membrane protein (RefSeq)||44, 129|
|BSU26600||bltD||spermine/spermidine acetyltransferase (RefSeq)||115, 129|
|BSU26660||yrdN||putative tautomerase (RefSeq)||129, 270|
|BSU37040||ywkB||putative transporter (RefSeq)||129, 387|
|BSU38760||cydA||cytochrome bd ubiquinol oxidase (subunit I) (RefSeq)||178, 189|
|BSU40560||yybP||putative lipoprotein (RefSeq)||52, 178|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Regulation tab for each gene includes regulatory influences such as environmental factors or transcription factors or their combinations identified by regulatory network inference algorithms.
If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Module Members Tab
Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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