Organism : Bacillus subtilis | Module List :
Regulation information for BSU07660(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU07660
|Gene||Common Name||Description||Module membership|
|BSU00180||tadA||tRNA specific adenosine deaminase (RefSeq)||111, 123|
|BSU01520||ybaK||putative alkylated deoxynucleotide triphosphohydrolase (RefSeq)||129, 174|
|BSU03680||yclG||putative uronase (RefSeq)||129, 156|
|BSU04170||ydaB||putative acyl-CoA ligase (RefSeq)||129, 387|
|BSU04550||ydbP||putative thioredoxin or thiol-disulfide isomerase (RefSeq)||123, 373|
|BSU04610||ydcA||hypothetical protein (RefSeq)||115, 123|
|BSU05660||ydgI||putative dehydrogenase (RefSeq)||123, 262|
|BSU05670||ydgJ||putative transcriptional regulator (MarR family) (RefSeq)||123, 262|
|BSU05950||ydiF||putative ABC transporter (ATP-binding protein) (RefSeq)||123, 373|
|BSU06790||yeeD||hypothetical protein (RefSeq)||129, 178|
|BSU06800||yezA||hypothetical protein (RefSeq)||129, 311|
|BSU07130||lplD||putative glycosidase (RefSeq)||33, 129|
|BSU07140||yetF||hypothetical protein (RefSeq)||129, 304|
|BSU07660||yflJ||hypothetical protein (RefSeq)||123, 129|
|BSU07670||yflI||hypothetical protein (RefSeq)||123, 151|
|BSU08210||malQ||maltose and maltodextrin ABC transporter subunit (ATP-binding protein) (RefSeq)||123, 296|
|BSU08880||rpsN||30S ribosomal protein S14 (RefSeq)||123, 200|
|BSU10480||yhjE||putative integral inner membrane protein (RefSeq)||123, 262|
|BSU10490||sipV||type I signal peptidase (RefSeq)||123, 262|
|BSU11640||yjbQ||putative Na+/H+ antiporter (RefSeq)||123, 378|
|BSU13150||ohrR||transcriptional regulator sensing organic peroxides (RefSeq)||111, 123|
|BSU14460||ykpC||hypothetical protein (RefSeq)||129, 286|
|BSU15060||ylbM||hypothetical protein (RefSeq)||111, 123|
|BSU15110||ylbQ||2-dehydropantoate 2-reductase (RefSeq)||123, 378|
|BSU17260||aprX||alkaline serine protease (RefSeq)||129, 178|
|BSU18690||yoaP||hypothetical protein (RefSeq)||64, 129|
|BSU18700||yoaQ||hypothetical protein (RefSeq)||129, 411|
|BSU18960||yozM||putative bacteriophage protein (RefSeq)||129, 181|
|BSU19800||phy||phytase (RefSeq)||129, 231|
|BSU22940||prsW||protease required for RsiW anti-sigma(W) degradation (RefSeq)||123, 311|
|BSU23540||yqkK||hypothetical protein (RefSeq)||129, 270|
|BSU25060||yqfZ||factor involved in motility (RefSeq)||123, 239|
|BSU25110||yqfU||putative integral inner membrane protein (RefSeq)||116, 123|
|BSU26060||yqbM||hypothetical protein (RefSeq)||129, 130|
|BSU26130||yqbF||hypothetical protein; skin element (RefSeq)||129, 238|
|BSU26150||yqbD||putative DNA wielding protein; skin element (RefSeq)||129, 206|
|BSU26360||yqaD||conserved hypothetical protein; skin element (RefSeq)||52, 129|
|BSU26410||yrkR||phosphate-starvation-inducible protein PsiE (RefSeq)||44, 129|
|BSU26420||yrkQ||two-component sensor histidine kinase [YrkP] (RefSeq)||129, 270|
|BSU26430||yrkP||two-component response regulator [YrkQ] (RefSeq)||44, 129|
|BSU26440||yrkO||putative integral inner membrane protein (RefSeq)||44, 129|
|BSU26600||bltD||spermine/spermidine acetyltransferase (RefSeq)||115, 129|
|BSU26660||yrdN||putative tautomerase (RefSeq)||129, 270|
|BSU27000||yraB||putative transcriptional regulator (MerR family) (RefSeq)||123, 200|
|BSU27880||nifS||cysteine desulfurase (RefSeq)||15, 123|
|BSU33420||nhaK||Na+/H+ antiporter (RefSeq)||31, 123|
|BSU35090||yvmA||putative efflux transporter (RefSeq)||123, 378|
|BSU37040||ywkB||putative transporter (RefSeq)||129, 387|
|BSU37140||ywjG||putative oxidoreductase (RefSeq)||123, 378|
|BSU37550||ywhA||putative transcriptional regulator (MarR family) (RefSeq)||111, 123|
|BSU37680||ywfH||carrier protein reductase of bacilysin synthesis (RefSeq)||123, 350|
|BSU38550||ywaA||branched-chain amino acid aminotransferase (RefSeq)||123, 145|
|BSU38950||yxjH||putative methyl-tetrahydrofolate methyltransferase (RefSeq)||28, 123|
|BSU38960||yxjG||putative methyltetrahydrofolate methyltransferase (RefSeq)||28, 123|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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