33680 HMG-CoA_reductase_classI
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33680 chr_4 HMG-CoA_reductase_classI 2350119 2351349 + HMG-CoA_reductase_classI

Synonyms

NCBI ID Ensembl Genomes exon ID
7452268 Thaps33680.2, Thaps33680.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0380

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0061
 0.42

Most Highly Correlated Transcripts

263997

(APA1) Adaptin_N
0.8676

10037

hypothetical protein
0.8402

20786

SCP_euk
0.8391

263994

Adaptin_N
0.8356

3600

Bromodomain superfamily
0.8333

261905

PRK05617
0.8268

22183

hypothetical protein
0.8208

21795

SCP superfamily
0.8178

22522

PI-PLCc_GDPD_SF superfamily
0.8143

13556

BglC
0.8112

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMG-CoA_reductase_classI Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR); Hydroxymethylglutaryl-coenzyme... cl00205 552.544 0 3 - 363 specific 153081
HMG-CoA_reductase superfamily Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR); Hydroxymethylglutaryl-coenzyme A (HMG-... - 552.544 0 3 - 363 superfamily 260259

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16870 PHATRDRAFT_16870 272101 288249 444446 Not available AT1G76490.1 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004420 GO:0009058 GO:0006629 GO:0016021 -

GO:0004420

hydroxymethylglutaryl-CoA reductase (NADPH) activity

Details: 
Catalysis of the reaction: (R)-mevalonate + CoA + 2 NADP(+) = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 H(+) + 2 NADPH.
GO Category: 
MF

GO:0009058

biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO Category: 
BP

GO:0006629

lipid metabolic process

Details: 
The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

Add comment

Log in to post comments