42821 PRK14333
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42821 chr_19a_19 PRK14333 181294 182826 - PRK14333

Synonyms

NCBI ID Ensembl Genomes exon ID
7449889 Thaps42821.3, Thaps42821.2, Thaps42821.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0231

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0195
 0.28

Most Highly Correlated Transcripts

3858

PTZ00141
0.9138

25473

SpoU_methylase
0.9088

260748

AdoMet_MTases superfamily
0.9071

10278

YihA_EngB
0.9051

262699

YgdL_like
0.9006

21959

hypothetical protein
0.896

24429

PRMT5 superfamily
0.8949

26492

PRK05385
0.8932

22499

TrmA
0.8904

34021

Methyltrn_RNA_3
0.8884

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UPF0004 superfamily Uncharacterized protein family UPF0004; This family is the N terminal half of the Prosite family.... - 125.306 8.42E-35 2 - 94 superfamily 250224
UPF0004 superfamily Uncharacterized protein family UPF0004; This family is the N terminal half of the Prosite family.... - 125.306 8.42E-35 2 - 94 superfamily 250224
PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional - 695.258 0 2 - 428 multi-dom 237677

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_18877 PHATRDRAFT_18877 183336 319725 308277 Cre11.g467633.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005554 GO:0003824 GO:0005506 -

GO:0005554

NA

Details: 
NA
GO Category: 
NA

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

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