Thaps_bicluster_0023 Residual: 0.43
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0023 0.43 Thalassiosira pseudonana
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Displaying 1 - 44 of 44
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10638 hypothetical protein

10638 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10638
10747 hypothetical protein

10747 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10747
10761 (Tp_HSF_2a) HSF_DNA-bind superfamily

10761 - (Tp_HSF_2a) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677, GO:0004308

CD Domains:

Go To Gene Page:

10761
11243 hypothetical protein

11243 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11243
11431 hypothetical protein

11431 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11431
11725 hypothetical protein

11725 - hypothetical protein

GO Terms:

GO:0003677, GO:0006310

CD Domains:

Go To Gene Page:

11725
12074 hypothetical protein

12074 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12074
12123 hypothetical protein

12123 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12123
12188 hypothetical protein

12188 - hypothetical protein

GO Terms:

GO:0004339

CD Domains:

Go To Gene Page:

12188
1426 COG2403

1426 - COG2403

GO Terms:

GO:0005509

CD Domains:

Go To Gene Page:

1426
14616 Motor_domain superfamily

14616 - Motor_domain superfamily

GO Terms:

GO:0003777, GO:0005524, GO:0005875, GO:0007018

CD Domains:

Go To Gene Page:

14616
17312 PLN02664

17312 - PLN02664

GO Terms:

GO:0003824, GO:0008152, GO:0000247, GO:0008416, GO:0016863, GO:0018842

CD Domains:

Go To Gene Page:

17312
1914 hypothetical protein

1914 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1914
20848 SEC14

20848 - SEC14

GO Terms:

NA

CD Domains:

Go To Gene Page:

20848
21066 hypothetical protein

21066 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21066
2222 COG2319

2222 - COG2319

GO Terms:

NA

CD Domains:

Go To Gene Page:

2222
23942 hypothetical protein

23942 - hypothetical protein

GO Terms:

GO:0004672, GO:0005524, GO:0006468

CD Domains:

Go To Gene Page:

23942
24260 hypothetical protein

24260 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24260
24359 hypothetical protein

24359 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24359
24491 hypothetical protein

24491 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24491
24631 hypothetical protein

24631 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24631
25014 hypothetical protein

25014 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25014
25493 hypothetical protein

25493 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25493
261974 (Tp_HSF_2.7c) HSF_DNA-bind superfamily

261974 - (Tp_HSF_2.7c) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

261974
262907 hypothetical protein

262907 - hypothetical protein

GO Terms:

GO:0005576, GO:0006030, GO:0008061

CD Domains:

Go To Gene Page:

262907
263277 S2P-M50_like_2

263277 - S2P-M50_like_2

GO Terms:

GO:0004222, GO:0006508

CD Domains:

Go To Gene Page:

263277
263643 Tub superfamily

263643 - Tub superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

263643
264312

264312 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

264312
264575 (Tp_HSF_2.6a) regulator [Rayko]

264575 - (Tp_HSF_2.6a) regulator [Rayko]

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

264575
264590 (Tp_HSF_3.5c) HSF_DNA-bind superfamily

264590 - (Tp_HSF_3.5c) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

264590
27922 CAP_GLY

27922 - CAP_GLY

GO Terms:

NA

CD Domains:

Go To Gene Page:

27922
3594 (Tp_CCHH24) regulator [Rayko]

3594 - (Tp_CCHH24) regulator [Rayko]

GO Terms:

GO:0003676, GO:0005634, GO:0008270

CD Domains:

Go To Gene Page:

3594
38890 Mito_carr

38890 - Mito_carr

GO Terms:

GO:0005488, GO:0006810, GO:0016020

CD Domains:

Go To Gene Page:

38890
38973 RabGAP-TBC

38973 - RabGAP-TBC

GO Terms:

NA

CD Domains:

Go To Gene Page:

38973
4074 hypothetical protein

4074 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4074
4077 hypothetical protein

4077 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4077
4288 WRN_exo

4288 - WRN_exo

GO Terms:

GO:0003676, GO:0005622, GO:0008408

CD Domains:

Go To Gene Page:

4288
5155 hypothetical protein

5155 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5155
5325 hypothetical protein

5325 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5325
5889 hypothetical protein

5889 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5889
5924 Mito_carr

5924 - Mito_carr

GO Terms:

GO:0005488, GO:0006810, GO:0016020, GO:0005743, GO:0005215

CD Domains:

Go To Gene Page:

5924
9073 hypothetical protein

9073 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9073
9306 hypothetical protein

9306 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9306
GO ID Go Term p-value q-value Cluster
GO:0006511 ubiquitin-dependent protein catabolic process 0.0031011 1 Thaps_bicluster_0023
GO:0042549 photosystem II stabilization 0.0123506 1 Thaps_bicluster_0023
GO:0006355 regulation of transcription, DNA-dependent 0.0124234 1 Thaps_bicluster_0023
GO:0006310 DNA recombination 0.0574088 1 Thaps_bicluster_0023
GO:0006030 chitin metabolism 0.0632695 1 Thaps_bicluster_0023
GO:0006810 transport 0.109304 1 Thaps_bicluster_0023
GO:0007018 microtubule-based movement 0.125531 1 Thaps_bicluster_0023
GO:0006468 protein amino acid phosphorylation 0.139278 1 Thaps_bicluster_0023
GO:0006508 proteolysis and peptidolysis 0.602351 1 Thaps_bicluster_0023
GO:0008152 metabolism 0.732978 1 Thaps_bicluster_0023
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