21742 RNase_PH_RRP45
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21742 chr_3 RNase_PH_RRP45 906188 907918 + RNase_PH_RRP45

Synonyms

NCBI ID Ensembl Genomes exon ID
7444769 Thaps21742.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0240

Most Highly Correlated Transcripts

10095

RNase_PH superfamily
0.9246

262555

AAT_I superfamily
0.9014

268027

Met_10
0.9004

268136

COG1054
0.8993

bd1807

(bd1807) RRS1 superfamily
0.8962

8270

ANK
0.8946

31665

LepA
0.8927

5484

DUF914
0.8859

24850

hypothetical protein
0.8844

267979

HCO3_cotransp superfamily
0.8843

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNase_PH_RRP45 RRP45 subunit of eukaryotic exosome; The RRP45 subunit of eukaryotic exosome is a member of the... cl03114 268.627 1.93E-85 13 - 332 specific 206773
RNase_PH superfamily RNase PH-like 3'-5' exoribonucleases; RNase PH-like 3'-5'... - 268.627 1.93E-85 13 - 332 superfamily 261591
COG2123 RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] - 105.138 2.94E-25 37 - 339 multi-dom 225034

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16560 PHATRDRAFT_16560 199504 224082 78153 Cre03.g175000.t1.2 AT3G60500.3 502345

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0000175 GO:0003723 GO:0006396 GO:0004534 GO:0016896 -

GO:0000175

3'-5'-exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.
GO Category: 
MF

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0004534

5'-3' exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of an RNA molecule.
GO Category: 
MF

GO:0016896

exoribonuclease activity, producing 5'-phosphomonoesters

Details: 
Catalysis of the hydrolysis of ester linkages within ribonucleic acids by removing nucleotide residues from the 3' or 5' end to yield 5' phosphomonoesters.
GO Category: 
MF

Add comment

Log in to post comments