Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_3435(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_3435
|Gene||Common Name||Description||Module membership|
|RSP_0010||RSP_0010||homoserine O-succinyltransferase (NCBI)||91, 133|
|RSP_0011||RSP_0011||Predicted hydrolases or acyltransferases (alpha/beta hydrolase) (NCBI)||91, 366|
|RSP_0013||RSP_0013||hypothetical protein (NCBI)||68, 91|
|RSP_0014||RSP_0014||transcriptional regulator, TetR family (NCBI)||91, 215|
|RSP_0425||metG||Methionyl-tRNA synthetase (NCBI)||311, 316|
|RSP_0478||RSP_0478||putative lysyl-tRNA synthetase (NCBI)||183, 316|
|RSP_0567||RSP_0567||Probable Methylated-DNA-(protein)-cysteine S-methyltransferase (NCBI)||316, 337|
|RSP_0774||RSP_0774||RNA binding protein (NCBI)||91, 184|
|RSP_0819||rhlE2||DEAD/DEAH box helicase (NCBI)||209, 316|
|RSP_1018||RSP_1018||Glycolate oxidase iron-sulfur subunit (NCBI)||91, 148|
|RSP_1019||RSP_1019||putative glycolate oxidase subunit protein (NCBI)||91, 148|
|RSP_1034||pdhR||Pyruvate dehydrogenase complex repressor (NCBI)||91, 148|
|RSP_1128||dapE||succinyl-diaminopimelate desuccinylase (NCBI)||69, 316|
|RSP_1130||RSP_1130||hypothetical membrane protein (NCBI)||54, 91|
|RSP_1172||dnaJ||Chaperone, DnaJ (NCBI)||91, 297|
|RSP_1292||RSP_1292||putative Aldehyde dehydrogenase (NCBI)||91, 107|
|RSP_1426||RSP_1426||RNA-binding region RNP-1 (NCBI)||209, 316|
|RSP_1427||RSP_1427||hypothetical protein (NCBI)||209, 316|
|RSP_1487||RSP_1487||hypothetical protein (NCBI)||91, 289|
|RSP_1488||RSP_1488||Possible glyoxalase (NCBI)||91, 289|
|RSP_1516||RSP_1516||putative S-adenosyl L-homocystein hydrolase (NCBI)||91, 197|
|RSP_1895||RSP_1895||Small-conductance mechanosensitive ion channel (NCBI)||91, 231|
|RSP_1899||RSP_1899||Predicted ATPase (NCBI)||91, 220|
|RSP_1900||RSP_1900||hypothetical protein (NCBI)||91, 233|
|RSP_1901||RSP_1901||Hypothetical protein with TPR repeat (NCBI)||91, 245|
|RSP_2254||RSP_2254||ABC efflux transporter, fused ATPase and inner membrane subunits (NCBI)||115, 316|
|RSP_2263||RSP_2263||hypothetical protein (NCBI)||91, 125|
|RSP_2409||rluD||putative Pseudouridine synthase, Rlu (NCBI)||54, 316|
|RSP_2456||radA||DNA Repair Protein (NCBI)||39, 91|
|RSP_2552||exoU||Glycosyl transferase, family 2 (NCBI)||209, 316|
|RSP_2558||RSP_2558||hypothetical protein (NCBI)||157, 316|
|RSP_2605||RSP_2605||hypothetical protein (NCBI)||91, 197|
|RSP_2606||RSP_2606||ArsR family Arsenical Resistance Operon Repressor (NCBI)||91, 197|
|RSP_2607||RSP_2607||nitrilotriacetate monooxygenase component B (NCBI)||91, 197|
|RSP_2608||corA||magnesium/cobalt transport protein, MIT family (NCBI)||91, 197|
|RSP_2659||dgt||Deoxyguanosinetriphosphate triphosphohydrolase (NCBI)||117, 316|
|RSP_2810||RSP_2810||ABC transporter, ATPase subunit (NCBI)||91, 294|
|RSP_3005||RSP_3005||hypothetical protein (NCBI)||40, 316|
|RSP_3006||RSP_3006||conserved hypothetical protein containing Von Willebrand factor, type A domain (NCBI)||40, 316|
|RSP_3107||RSP_3107||hypothetical protein (NCBI)||91, 350|
|RSP_3317||RSP_3317||transcriptional regulator, TetR family (NCBI)||247, 316|
|RSP_3318||acrB||Cation/multidrug efflux pump, RND family (NCBI)||301, 316|
|RSP_3321||acrA||Cation/multidrug efflux pump, membrane-fusion protein (NCBI)||301, 316|
|RSP_3384||RSP_3384||mandelate racemase/muconate lactonizing enzyme family protein (NCBI)||91, 346|
|RSP_3435||RSP_3435||possible DNA-binding protein (NCBI)||91, 316|
|RSP_3456||RSP_3456||Putative dihydrodipicolinate synthase (NCBI)||61, 91|
|RSP_3658||hpcH||putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (NCBI)||105, 316|
|RSP_3785||RSP_3785||putative bacteriophage-related protein (NCBI)||91, 105|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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