Rv0324 Transcriptional regulator, ArsR family

Rv0324 (Transcriptional regulator, ArsR family) is predicted to be co-regulated in modules bicluster_0498 with residual 0.51 and bicluster_0546 with residual 0.58.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 6.30 for bicluster_0498 and 0.00 and 0.21 for bicluster_0546 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 41 - 50 of 161
Gene Target Differential Expression Distance Expression pvalue Type
Repressed 45 -0.73 0.00458301 Primary.TSS
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
No 64 -0.41 0.00315351 Primary.TSS
Phage peptidoglycan binding endopeptidase
No -4 -0.27 0.151121 Primary.TSS
No 6 -0.22 0.312368 CDS
No -148 -0.22 0.312368 Internal.TSS
Cu+ P-type ATPase
No -148 -0.16 0.344058 Primary.TSS
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)
Repressed -61 -2.53 0 Antisense.TSS
Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)
Repressed -70 -2.53 0 CDS
No -61 0.48 0.0000193 Primary.TSS
DNA-binding response regulator TrcR
Repressed 22 -3.03 3.94045e-42 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 9.75 U
D3I 3 3 3.83 9.21 I
D3U 3 3 3.83 9.54 U
D5I 9 5 6.00 9.00 I
D5U 17 5 6.00 11.09 U
D7I 18 7 8.14 6.42 I
D7U 19 7 8.14 8.94 U
D14I 4 14 15.63 3.03 I
D14U 4 14 15.63 6.75 U
D17I 3 17 19.15 I
D17U 3 17 19.15 5.68 U
D21I 4 21 23.23 1.11 I
D21U 4 21 23.23 5.41 U
D24I 3 24 26.60 I
D24U 3 24 26.60 5.48 U
D28I 4 28 30.61 1.11 I
D28U 4 28 30.61 4.81 U