Rv0324 Transcriptional regulator, ArsR family

Rv0324 (Transcriptional regulator, ArsR family) is predicted to be co-regulated in modules bicluster_0498 with residual 0.51 and bicluster_0546 with residual 0.58.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 6.30 for bicluster_0498 and 0.00 and 0.21 for bicluster_0546 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 21 - 30 of 161
Gene Target Differential Expression Distance Expression pvalue Type
13E12 repeat family protein
No -60 0.17 0.519739 CDS
Repressed -30 -3.06 0 Primary.TSS
Programmed cell death toxin YdcE
Repressed 30 -1.07 0.00000045 Primary.TSS
Prolyl endopeptidase (EC 3.4.21.26)
No 69 -0.13 0.767588 CDS
Aldehyde dehydrogenase (EC 1.2.1.3)
Repressed 32 -2.73 6.02e-34 Primary.TSS
Phosphoserine phosphatase (EC 3.1.3.3)
No 12 -0.2 0.0570432 Primary.TSS
membrane protein, MmpS family
No -1 -0.42 0.0075861 Primary.TSS
PE-PGRS FAMILY PROTEIN
Repressed 1 -1.4 7.95e-18 Primary.TSS
No -22 0.44 0.0000816 Primary.TSS
Enoyl-CoA hydratase
Repressed -70 -0.9 2.5e-25 Primary.TSS
not assigned to any KEGG Pathway.
Description:Expression data from transcription factor over expression experiments. TFOE are matched to the ChIP-seq experiment done simultaneously. This dataset is described in Rustad et al. 2014, Genome Biology.
BioProject Accession GEO Series References Repository Sample Method Sample Type
PRJNA254351 GSM1426454 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426455 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426456 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426457 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426452 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426453 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426454 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426455 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426456 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426457 GSE59086 25232098 GEO Tiling Array RNA
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 9.75 U
D3I 3 3 3.83 9.21 I
D3U 3 3 3.83 9.54 U
D5I 9 5 6.00 9.00 I
D5U 17 5 6.00 11.09 U
D7I 18 7 8.14 6.42 I
D7U 19 7 8.14 8.94 U
D14I 4 14 15.63 3.03 I
D14U 4 14 15.63 6.75 U
D17I 3 17 19.15 I
D17U 3 17 19.15 5.68 U
D21I 4 21 23.23 1.11 I
D21U 4 21 23.23 5.41 U
D24I 3 24 26.60 I
D24U 3 24 26.60 5.48 U
D28I 4 28 30.61 1.11 I
D28U 4 28 30.61 4.81 U