Rv0324 Transcriptional regulator, ArsR family

Rv0324 (Transcriptional regulator, ArsR family) is predicted to be co-regulated in modules bicluster_0498 with residual 0.51 and bicluster_0546 with residual 0.58.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 6.30 for bicluster_0498 and 0.00 and 0.21 for bicluster_0546 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 31 - 40 of 161
Gene Target Differential Expression Distance Expression pvalue Type
DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)
No 9 -0.29 0.0631178 CDS
Acyl-CoA dehydrogenase (EC 1.3.99.3)
No -25 0 0.988844 Primary.TSS
SSU ribosomal protein S19p (S15e)
No -36 -0.07 0.833531 CDS
No -20 0.51 0.0648505 CDS
Mobile element protein
No 0 -0.38 0.0435217 Primary.TSS
PE-PGRS FAMILY PROTEIN
No 6 0.11 0.789658 Primary.TSS
PPE family protein
No 34 0 0.996734 Primary.TSS
Alcohol dehydrogenase (EC 1.1.1.1)
No -101 -0.3 0.159598 Primary.TSS
Transglutaminase-like enzymes, putative cysteine proteases
No 44 -0.04 0.8941 CDS
3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)
No 50 -0.53 0.0000129 Primary.TSS
not assigned to any KEGG Pathway.
Description:Expression data from transcription factor over expression experiments. TFOE are matched to the ChIP-seq experiment done simultaneously. This dataset is described in Rustad et al. 2014, Genome Biology.
BioProject Accession GEO Series References Repository Sample Method Sample Type
PRJNA254351 GSM1426452 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426453 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426454 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426455 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426456 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426457 GSE59086 25232098 GEO Tiling Array RNA
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 9.75 U
D3I 3 3 3.83 9.21 I
D3U 3 3 3.83 9.54 U
D5I 9 5 6.00 9.00 I
D5U 17 5 6.00 11.09 U
D7I 18 7 8.14 6.42 I
D7U 19 7 8.14 8.94 U
D14I 4 14 15.63 3.03 I
D14U 4 14 15.63 6.75 U
D17I 3 17 19.15 I
D17U 3 17 19.15 5.68 U
D21I 4 21 23.23 1.11 I
D21U 4 21 23.23 5.41 U
D24I 3 24 26.60 I
D24U 3 24 26.60 5.48 U
D28I 4 28 30.61 1.11 I
D28U 4 28 30.61 4.81 U