Rv0324 Transcriptional regulator, ArsR family

Rv0324 (Transcriptional regulator, ArsR family) is predicted to be co-regulated in modules bicluster_0498 with residual 0.51 and bicluster_0546 with residual 0.58.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 6.30 for bicluster_0498 and 0.00 and 0.21 for bicluster_0546 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 11 - 20 of 161
Gene Target Differential Expression Distance Expression pvalue Type
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Repressed -82 -0.77 0.0029842 CDS
Possible membrane protein
No -129 -0.21 0.165482 CDS
Repressed -41 -1.14 0.00000000011 Primary.TSS
Possible membrane protein
No 34 -0.55 0.00136441 Antisense.TSS
Possible membrane protein
No 18 -0.55 0.00136441 CDS
Possible membrane protein
No 44 -0.55 0.00136441 Internal.TSS
Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
Repressed 34 -1.27 0.0000000000234 Primary.TSS
Transcriptional regulator, ArsR family
Induced 1 4.7 0 CDS
Oxidoreductase (flavoprotein)
Repressed 1 -1.21 0.000000000601 Primary.TSS
No -59 -0.03 0.930292 CDS
not assigned to any KEGG Pathway.
Description:Expression data from transcription factor over expression experiments. TFOE are matched to the ChIP-seq experiment done simultaneously. This dataset is described in Rustad et al. 2014, Genome Biology.
BioProject Accession GEO Series References Repository Sample Method Sample Type
PRJNA254351 GSM1426456 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426457 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426452 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426453 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426454 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426455 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426456 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426457 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426452 GSE59086 25232098 GEO Tiling Array RNA
PRJNA254351 GSM1426453 GSE59086 25232098 GEO Tiling Array RNA
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 9.75 U
D3I 3 3 3.83 9.21 I
D3U 3 3 3.83 9.54 U
D5I 9 5 6.00 9.00 I
D5U 17 5 6.00 11.09 U
D7I 18 7 8.14 6.42 I
D7U 19 7 8.14 8.94 U
D14I 4 14 15.63 3.03 I
D14U 4 14 15.63 6.75 U
D17I 3 17 19.15 I
D17U 3 17 19.15 5.68 U
D21I 4 21 23.23 1.11 I
D21U 4 21 23.23 5.41 U
D24I 3 24 26.60 I
D24U 3 24 26.60 5.48 U
D28I 4 28 30.61 1.11 I
D28U 4 28 30.61 4.81 U