Organism : Bacillus subtilis | Module List :
Regulation information for BSU11320(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU11320
|Gene||Common Name||Description||Module membership|
|BSU02130||glpQ||glycerophosphoryl diester phosphodiesterase (RefSeq)||285, 411|
|BSU02140||glpT||glycerol-3-phosphate permease (RefSeq)||285, 411|
|BSU02710||yczC||putative integral inner membrane protein (RefSeq)||96, 307|
|BSU03340||yciA||putative GTP cyclohydrolase (RefSeq)||307, 406|
|BSU04000||ycsA||tartrate dehydrogenase (RefSeq)||168, 411|
|BSU04110||lipC||lysophopholipase (RefSeq)||11, 307|
|BSU05740||phoB||alkaline phosphatase III (RefSeq)||86, 411|
|BSU06870||yesE||hypothetical protein (RefSeq)||307, 361|
|BSU08230||catD||catechol-2,3-dioxygenase membrane subunit (RefSeq)||178, 307|
|BSU08240||catE||catechol-2,3-dioxygenase subunit (RefSeq)||238, 307|
|BSU08290||yfiJ||two-component sensor histidine kinase [YfiK] (RefSeq)||132, 307|
|BSU08300||yfiK||two-component response regulator [YfiJ] (RefSeq)||48, 307|
|BSU09300||glpD||glycerol-3-phosphate oxidase (RefSeq)||22, 411|
|BSU09440||citA||citrate synthase I (RefSeq)||102, 411|
|BSU10170||fabHB||3-oxoacyl-(acyl carrier protein) synthase III (RefSeq)||307, 411|
|BSU11040||yitM||hypothetical protein (RefSeq)||217, 307|
|BSU11320||yjzB||hypothetical protein (RefSeq)||307, 411|
|BSU11410||yjbA||putative nucleic acid binding protein (RefSeq)||127, 411|
|BSU17520||ynaD||putative N-acetyltransferase (RefSeq)||219, 411|
|BSU18700||yoaQ||hypothetical protein (RefSeq)||129, 411|
|BSU18860||yozH||hypothetical protein (RefSeq)||246, 411|
|BSU19250||yocL||hypothetical protein (RefSeq)||202, 411|
|BSU19260||yocM||putative spore coat protein (RefSeq)||16, 411|
|BSU19600||yodH||putative S-adenosylmethionine-dependent methyltransferase (RefSeq)||280, 411|
|BSU21310||yozP||hypothetical protein; phage SPbeta (RefSeq)||174, 307|
|BSU21530||yolB||conserved hypothetical protein; phage SPbeta (RefSeq)||298, 307|
|BSU21540||yolA||exported protein of unknown function; phage SPbeta (RefSeq)||298, 307|
|BSU24580||yqhH||putative RNA polymerase-associated helicase protein (RefSeq)||55, 411|
|BSU24590||yqhG||hypothetical protein (RefSeq)||239, 411|
|BSU26740||cypA||cytochrome P450 (RefSeq)||280, 307|
|BSU27310||pbpI||penicillin-binding protein PBP4B (RefSeq)||304, 411|
|BSU31470||kapD||sporulation inhibitor KapD (RefSeq)||238, 411|
|BSU32070||yuiC||hypothetical protein (RefSeq)||291, 307|
|BSU32340||lytH||sporulation-specific L-Ala-D-Glu endopeptidase (RefSeq)||43, 411|
|BSU32650||yurS||hypothetical protein (RefSeq)||280, 307|
|BSU32950||yusW||putative lipoprotein (RefSeq)||55, 411|
|BSU34000||cyeB||cysteine and O-acetylserine efflux permease (RefSeq)||96, 307|
|BSU35280||yvjA||putative integral inner membrane protein (RefSeq)||307, 411|
|BSU35770||tagC||putative polyglycerol phosphate assembly and export protein (teichoic acid biosynthesis) (RefSeq)||239, 307|
|BSU36480||ywoD||putative efflux transporter (RefSeq)||50, 307|
|BSU36490||ywoC||putative hydrolase (RefSeq)||50, 307|
|BSU36500||ywoB||putative integral inner membrane protein (RefSeq)||130, 307|
|BSU38230||ywcB||putative phage protein (superinfection immunity) (RefSeq)||33, 411|
|BSU38250||ywbO||putative sulfur oxido-reductase (RefSeq)||96, 307|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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