Organism : Bacillus subtilis | Module List :
Regulation information for BSU31430(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU31430
|Gene||Common Name||Description||Module membership|
|BSU02180||ybfE||hypothetical protein (RefSeq)||163, 167|
|BSU02710||yczC||putative integral inner membrane protein (RefSeq)||96, 307|
|BSU03110||ycgH||putative amino acid transporter (RefSeq)||96, 156|
|BSU03360||yciC||putative metallochaperone with NTPase activity (RefSeq)||163, 291|
|BSU08640||yfhS||hypothetical protein (RefSeq)||163, 365|
|BSU10470||yhjD||hypothetical protein (RefSeq)||96, 178|
|BSU11020||yitK||putative nucleotide-binding protein (RefSeq)||23, 163|
|BSU12080||ctaO||protoheme IX farnesyltransferase (heme O synthase) (RefSeq)||96, 189|
|BSU12500||xkdA||PBSX phage protein, putative peptidase (RefSeq)||64, 96|
|BSU13400||ligD||ATP-dependent DNA ligase (RefSeq)||87, 96|
|BSU13410||ykoV||ATP-dependent DNA ligase subunit (RefSeq)||55, 96|
|BSU15360||ylmC||hypothetical protein (RefSeq)||163, 327|
|BSU16110||dprA||DNA processing Smf single strand binding protein (RefSeq)||96, 98|
|BSU18710||yozF||putative lipoprotein (RefSeq)||55, 96|
|BSU18720||yoaR||putative factor for cell wall maintenance or synthesis (RefSeq)||96, 127|
|BSU18770||cyeA||cysteine and O-acetyl serine efflux permease (RefSeq)||96, 180|
|BSU21940||degR||activation of degradative enzymes (aprE, nprE, sacB) production or activity (RefSeq)||96, 342|
|BSU24910||yqgM||putative glycosyltransferase (RefSeq)||71, 96|
|BSU24920||yqgL||hypothetical protein (RefSeq)||71, 96|
|BSU26050||yqdB||hypothetical protein; skin element (NCBI)||163, 255|
|BSU26120||yqbG||conserved hypothetical protein; skin element (RefSeq)||96, 239|
|BSU28900||ysbB||antiholin-like protein LrgB (RefSeq)||96, 405|
|BSU28910||ysbA||murein hydrolase regulator LrgA (RefSeq)||96, 405|
|BSU30180||ytbQ||putative nucleoside-diphosphate-sugar epimerase (RefSeq)||163, 192|
|BSU30190||bioI||cytochrome P450 for pimelic acid formation for biotin biosynthesis (RefSeq)||163, 192|
|BSU30500||ytpB||hypothetical protein (RefSeq)||163, 398|
|BSU31420||yugF||putative hydrolase (RefSeq)||55, 96|
|BSU31430||yugE||hypothetical protein (RefSeq)||96, 163|
|BSU32020||yuiH||putative sulfite oxidase (RefSeq)||96, 291|
|BSU32120||yuzG||hypothetical protein (RefSeq)||14, 163|
|BSU32190||yuzB||hypothetical protein (RefSeq)||96, 115|
|BSU33050||gerAA||component of the GerA germination receptor (RefSeq)||96, 127|
|BSU33060||gerAB||component of the germination receptor GerA (RefSeq)||96, 127|
|BSU33070||gerAC||component of the germination receptor GerA (RefSeq)||96, 127|
|BSU33690||yvaQ||putative methyl-accepting transducer (RefSeq)||5, 96|
|BSU34000||cyeB||cysteine and O-acetylserine efflux permease (RefSeq)||96, 307|
|BSU37020||ywkD||putative lyase (RefSeq)||163, 265|
|BSU38250||ywbO||putative sulfur oxido-reductase (RefSeq)||96, 307|
|BSU38800||yxkH||putative exported polysaccharide deacetylase, lipoprotein (RefSeq)||96, 239|
|BSU40530||cotF||spore coat protein (RefSeq)||96, 174|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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