Thaps_bicluster_0037 Residual: 0.54
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0037 0.54 Thalassiosira pseudonana
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Displaying 1 - 47 of 47
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10115 NPD_like

10115 - NPD_like

GO Terms:

GO:0006118, GO:0016491, GO:0003938

CD Domains:

Go To Gene Page:

10115
10282 hypothetical protein

10282 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10282
10550 hypothetical protein

10550 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10550
11167 ZnMc superfamily

11167 - ZnMc superfamily

GO Terms:

GO:0004222, GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

11167
11697 hypothetical protein

11697 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11697
1843 Bestrophin

1843 - Bestrophin

GO Terms:

NA

CD Domains:

Go To Gene Page:

1843
2016 hypothetical protein

2016 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2016
20813 hypothetical protein

20813 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20813
20912 hypothetical protein

20912 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20912
21087 hypothetical protein

21087 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21087
21263 hypothetical protein

21263 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21263
21355 hypothetical protein

21355 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

21355
21386 Aldo_ket_red

21386 - Aldo_ket_red

GO Terms:

GO:0016491, GO:0004022, GO:0004023, GO:0004024, GO:0004025

CD Domains:

Go To Gene Page:

21386
21557 hypothetical protein

21557 - hypothetical protein

GO Terms:

GO:0000810, GO:0004787, GO:0008722, GO:0008758, GO:0008796, GO:0008828, GO:0016462, GO:0016818, GO:0019176, GO:0019177

CD Domains:

Go To Gene Page:

21557
23856 FANC superfamily

23856 - FANC superfamily

GO Terms:

GO:0004553, GO:0005975

CD Domains:

Go To Gene Page:

23856
24384 hypothetical protein

24384 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24384
25075 hypothetical protein

25075 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

25075
25857 hypothetical protein

25857 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25857
261255 Sec7

261255 - Sec7

GO Terms:

NA

CD Domains:

Go To Gene Page:

261255
261271 CDP-OH_P_transf

261271 - CDP-OH_P_transf

GO Terms:

GO:0008654, GO:0003881

CD Domains:

Go To Gene Page:

261271
262891 Nucleoporin2

262891 - Nucleoporin2

GO Terms:

GO:0005643, GO:0006810

CD Domains:

Go To Gene Page:

262891
263128 GAF

263128 - GAF

GO Terms:

NA

CD Domains:

Go To Gene Page:

263128
264293 DegQ

264293 - DegQ

GO Terms:

GO:0004252, GO:0006508

CD Domains:

Go To Gene Page:

264293
268206 hypothetical protein

268206 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

268206
268315 hypothetical protein

268315 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

268315
269248 (AAT1_2) Aminotran_1_2

269248 - (AAT1_2) Aminotran_1_2

GO Terms:

GO:0006520, GO:0008483, GO:0003824, GO:0009058, GO:0016769, GO:0004069

CD Domains:

Go To Gene Page:

269248
270299 hypothetical protein

270299 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

270299
27276 (PTP1) Mito_carr

27276 - (PTP1) Mito_carr

GO Terms:

GO:0005488, GO:0006810, GO:0016020, GO:0005743

CD Domains:

Go To Gene Page:

27276
3118 hypothetical protein

3118 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3118
31242 PtrB

31242 - PtrB

GO Terms:

GO:0006508, GO:0008236, GO:0004287, GO:0004252, GO:0008945

CD Domains:

Go To Gene Page:

31242
31747 SelR superfamily

31747 - SelR superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

31747
32510 PLN02741

32510 - PLN02741

GO Terms:

GO:0004746, GO:0009349

CD Domains:

Go To Gene Page:

32510
32691 BTB

32691 - BTB

GO Terms:

GO:0005515, GO:0005249, GO:0006813, GO:0008076, GO:0016020

CD Domains:

Go To Gene Page:

32691
34518 hypothetical protein

34518 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

34518
36411 STKc_AGC

36411 - STKc_AGC

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

36411
38258 ATM1

38258 - ATM1

GO Terms:

GO:0005524, GO:0006810, GO:0016021, GO:0042626, GO:0016887, GO:0000166, GO:0017111

CD Domains:

Go To Gene Page:

38258
38370 hypothetical protein

38370 - hypothetical protein

GO Terms:

GO:0008080

CD Domains:

Go To Gene Page:

38370
40073 gpsA

40073 - gpsA

GO Terms:

GO:0005975, GO:0016614, GO:0004367, GO:0006072, GO:0009331, GO:0005737, GO:0016616, GO:0046168, GO:0051287

CD Domains:

Go To Gene Page:

40073
5132 hypothetical protein

5132 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5132
6150 hypothetical protein

6150 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6150
6523 hypothetical protein

6523 - hypothetical protein

GO Terms:

GO:0003677, GO:0006306, GO:0008170

CD Domains:

Go To Gene Page:

6523
693 (MHMT1) metH

693 - (MHMT1) metH

GO Terms:

GO:0004156, GO:0009396, GO:0008898, GO:0008705, GO:0009086, GO:0005622, GO:0050897

CD Domains:

Go To Gene Page:

693
7628 hypothetical protein

7628 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7628
7928 hypothetical protein

7928 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7928
8825 hypothetical protein

8825 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8825
8945 hypothetical protein

8945 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8945
9635 hypothetical protein

9635 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9635
GO ID Go Term p-value q-value Cluster
GO:0009086 methionine biosynthesis 0.00825334 1 Thaps_bicluster_0037
GO:0046168 glycerol-3-phosphate catabolism 0.0123557 1 Thaps_bicluster_0037
GO:0006072 glycerol-3-phosphate metabolism 0.0164419 1 Thaps_bicluster_0037
GO:0009396 folic acid and derivative biosynthesis 0.0286045 1 Thaps_bicluster_0037
GO:0005975 carbohydrate metabolism 0.0376415 1 Thaps_bicluster_0037
GO:0006810 transport 0.0383364 1 Thaps_bicluster_0037
GO:0008654 phospholipid biosynthesis 0.0564306 1 Thaps_bicluster_0037
GO:0006520 amino acid metabolism 0.0834984 1 Thaps_bicluster_0037
GO:0006813 potassium ion transport 0.0873045 1 Thaps_bicluster_0037
GO:0006508 proteolysis and peptidolysis 0.112621 1 Thaps_bicluster_0037
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