Environment and Gene Regulatory Influence Network (EGRIN) model for C. difficile 630

The Environment and Gene Regulatory Influence Network (EGRIN) model of C. difficile 630 was inferred using cMonkey2 and a compendium of 136 transcriptomes (retrieved from the Gene Expression Omnibus repository) with 4,070 sequence features including 35 rRNAs and 90 tRNAs . The C. difficile EGRIN model groups genes in subsets (406 modules in total), that are co-regulated in specific environments, and also identifies the associated, putative cis-acting gene regulatory elements (GREs), which represent potential TF binding locations. Transcriptome compendium included conditions: response to iron limitation, response to oxygen, in vivo vs in vitro growth, short term infection (0, 30, 60, 120 mins), response to commensals and host diet, transition from exponential to stationary phase, fur KO, codY KO, sporulation TF (and sigma factors) KOs.

Explore Regulatory Modules

Displaying 181 - 190 of 406

Candidate transcriptional regulators for each module were determined with a linear regression based approach (Inferelator) and by evaluating the statistical significance of the overlap (Hypergeometric) between modules and putative TF and alternative sigma factor regulons (CcpA, CodY, Fur, PrdR, SigB, SigD, SigE, SigF, SigG, SigH, SigK, Spo0A) compiled from available literature.

* Given that translation start was used to define the 3' end of putative promoters, some cis-regulatory motifs are likely to be ribosome binding sites (i.e., Shine-Dalgarno sequence). RBS is typically a six nucleotide sequence 5'-GGAGGA-3'.

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Title Gene Count Motif 1 e-value Motif 2 e-value Residual Expression TF Influences
Module_201 23
  • CD630_24870 - Type: Gene
    Product:PTS system, fructose-like IIB component | Pathway: | COG: Carbohydrate transport and metabolism
  • CD630_30600 - Type: Gene
    Product:Phospho-alpha-glucosidase | Pathway: | COG: Carbohydrate transport and metabolism
  • CD630_25110 - Type: Gene
    Product:Transcription antiterminator, PTS operonregulator | Pathway: | COG: Transcription
  • CD630_24650 - Type: Gene
    Product:Putative amino acid/polyamine transporter | Pathway: | COG: Amino acid transport and metabolism
  • CD630_24850 - Type: Gene
    Product:Putative Xaa-Pro aminopeptidase, M24 family | Pathway: | COG: Amino acid transport and metabolism
  • CD630_03900 - bglG Type: Gene
    Product:Transcription antiterminator, PTS operonregulator | Pathway: | COG: Transcription
  • CD630_25090 - Type: Gene
    Product:Putative glycoside hydrolase, family 4 | Pathway: | COG: Carbohydrate transport and metabolism
  • CD630_05070 - Type: Gene
    Product:Putative conjugative transposon protein Tn5397,CTn3-Orf13 | Pathway: | COG: Function unknown
  • CD630_24890 - Type: Gene
    Product:Transcription antiterminator, PTS operonregulator | Pathway: | COG: Transcription
  • CD630_30580 - Type: Gene
    Product:PTS system, alpha-glucoside-specific IIAcomponent | Pathway: | COG: Carbohydrate transport and metabolism
  • CD630_03880 - bglF Type: Gene
    Product:PTS system, beta-glucoside-specific IIABCcomponent | Pathway: | COG: Carbohydrate transport and metabolism
  • CD630_25100 - Type: Gene
    Product:PTS system, glucose-like IIBC component | Pathway: | COG: Carbohydrate transport and metabolism
  • CD630_25120 - Type: Gene
    Product:PTS system, glucose-like IIA component | Pathway: | COG: Carbohydrate transport and metabolism
  • CD630_24860 - Type: Gene
    Product:PTS system, fructose-like IIC component | Pathway: | COG: Carbohydrate transport and metabolism
  • CD630_23280 - Type: Gene
    Product:Sigma-54 dpendent regulator, PTS fructose family | Pathway: | COG: Signal transduction mechanisms
  • CD630_24840 - Type: Gene
    Product:Putative pyridoxal phosphate-dependenttransferase | Pathway: | COG: Amino acid transport and metabolism
  • CD630_25080 - Type: Gene
    Product:Transcriptional regulator, AraC family | Pathway: | COG: Transcription
  • CD630_05060 - Type: Gene
    Product:Reverse transcriptase/maturase/endonuclease,Group II intron | Pathway: | COG: Replication, recombination and repair
  • CD630_24880 - Type: Gene
    Product:PTS system, fructose-like IIA component | Pathway: | COG: Carbohydrate transport and metabolism
  • CD630_30590 - Type: Gene
    Product:Putative membrane protein | Pathway: | COG:
  • CD630_03890 - bglA Type: Gene
    Product:6-phospho-beta-glucosidase | Pathway: | COG: Carbohydrate transport and metabolism
  • CD630_25070 - Type: Gene
    Product:Conserved hypothetical protein | Pathway: | COG: Function unknown
  • CD630_30570 - Type: Gene
    Product:Transporter, Major Facilitator Superfamily (MFS) | Pathway: | COG: Carbohydrate transport and metabolism
0 NA 0.49 Inferelator: 1
Hypergeometric: 1

TF Influences from Inferelator

  1. CD630_25080 - Type: Gene
    Product:Transcriptional regulator, AraC family | Pathway: | COG: Transcription

TF Influences from Hypergeometric Test

  1. CD630_12750 - codY Type: Gene
    Product:Transcriptional regulator, GTP-sensingpleiotropic repressor | Pathway: | COG: Transcription
Module_218 19
  • CD630_04351 - Type: Gene
    Product:Putative conjugative transposon proteinTn1549-like, CTn2-Orf32 | Pathway: | COG:
  • CD630_04360 - Type: Gene
    Product:Putative recombinase Tn1549-like, CTn2-Orf34 | Pathway: | COG: Replication, recombination and repair
  • CD630_21140 - Type: Gene
    Product:Two-component response regulator | Pathway: | COG: Signal transduction mechanisms
  • CD630_33722 - Type: Gene
    Product:Putative conjugative transposon proteinTn916-like, CTn7-Orf6 | Pathway: | COG: Function unknown
  • CD630_21130 - Type: Gene
    Product:Two-component sensor histidine kinase | Pathway: | COG: Signal transduction mechanisms
NA NA 0.49 Inferelator: 1
Hypergeometric: 0

TF Influences from Inferelator

  1. CD630_21140 - Type: Gene
    Product:Two-component response regulator | Pathway: | COG: Signal transduction mechanisms

TF Influences from Hypergeometric Test

No TF Influences from the hypergeometric test
Module_60 29
  • CD630_21160 - bipA Type: Gene
    Product:GTP-binding protein BipA | Pathway: | COG: Signal transduction mechanisms
  • CD630_12710 - Type: Gene
    Product:Putative restriction endonuclease | Pathway: | COG: Replication, recombination and repair
  • CD630_13840 - Type: Gene
    Product:Putative lamB-like protein, UPF0271 family | Pathway: | COG: Amino acid transport and metabolism
  • CD630_13860 - Type: Gene
    Product:Putative allophanate hydrolase subunit 1 | Pathway: | COG: Amino acid transport and metabolism
  • CD630_19760 - mutL Type: Gene
    Product:DNA mismatch repair protein MutL | Pathway: | COG: Replication, recombination and repair
  • CD630_12730 - Type: Gene
    Product:Putative DNA processing Smf single strand bindingprotein | Pathway: | COG: Replication, recombination and repair
  • CD630_12770 - Type: Gene
    Product:Putative acetyltransferase | Pathway: | COG: Transcription
  • CD630_19740 - hfq Type: Gene
    Product:Hfq RNA chaperone | Pathway: | COG: Signal transduction mechanisms
  • CD630_12790 - iscS2 Type: Gene
    Product:Cysteine desulfurase | Pathway: Cofactor biosynthesis | COG: Amino acid transport and metabolism
  • CD630_28270 - Type: Gene
    Product:Transcriptional regulator, MarR family | Pathway: | COG: Transcription
  • CD630_28250 - Type: Gene
    Product:Putative flavodoxin | Pathway: | COG: Energy production and conversion
  • CD630_14980 - sigA2 Type: Gene
    Product:RNA polymerase sigma factor SigA2 (sigma-43) | Pathway: | COG: Transcription
  • CD630_12800 - Type: Gene
    Product:Putative NifU-like protein | Pathway: | COG: Energy production and conversion
  • CD630_19720 - Type: Gene
    Product:Putative peptidase, M20A family | Pathway: | COG: Amino acid transport and metabolism
  • CD630_15340 - ggt Type: Gene
    Product:Gamma-glutamyltranspeptidase | Pathway: | COG: Amino acid transport and metabolism
  • CD630_14390 - Type: Gene
    Product:Putative transporter, LrgA family | Pathway: | COG: Function unknown
  • CD630_26750 - Type: Gene
    Product:Transcriptional regulator, LysR family | Pathway: | COG: Transcription
  • CD630_04352 - Type: Gene
    Product:Putative conjugative transposon proteinTn1549-like, CTn2-Orf33 | Pathway: | COG:
  • CD630_13870 - Type: Gene
    Product:Putative allophanate hydrolase subunit 2 | Pathway: | COG: Amino acid transport and metabolism
  • CD630_13850 - Type: Gene
    Product:Putative natural resistance-associated macrophageprotein | Pathway: | COG: Inorganic ion transport and metabolism
  • CD630_19770 - mutS Type: Gene
    Product:DNA mismatch repair protein MutS | Pathway: | COG: Replication, recombination and repair
  • CD630_22090 - Type: Gene
    Product:Putative GTP-binding protein, HflX type | Pathway: | COG: Function unknown
  • CD630_19730 - Type: Gene
    Product:Putative pyridoxal phosphate-dependenttransferase; putative aluminium resistance | Pathway: | COG: Inorganic ion transport and metabolism
  • CD630_19750 - miaA Type: Gene
    Product:tRNA delta(2)-isopentenylpyrophosphatetransferase | Pathway: | COG: Translation, ribosomal structure and biogenesis
  • CD630_28260 - Type: Gene
    Product:Putative aldolase | Pathway: | COG: Energy production and conversion
  • CD630_14400 - Type: Gene
    Product:Putative transporter, LrgB family | Pathway: | COG: Cell wall/membrane/envelope biogenesis
  • CD630_27960 - cwp10 Type: Gene
    Product:Cell surface protein | Pathway: | COG: Cell wall/membrane/envelope biogenesis
  • CD630_28290 - Type: Gene
    Product:Putative membrane protein | Pathway: | COG: Amino acid transport and metabolism, Carbohydrate transport and metabolism
  • CD630_22610 - Type: Gene
    Product:Putative peptidase, M24 family | Pathway: | COG: Amino acid transport and metabolism
0.00000000052 NA 0.50 Inferelator: 1
Hypergeometric: 0

TF Influences from Inferelator

  1. CD630_17820 - Type: Gene
    Product:Two-component response regulator | Pathway: | COG: Signal transduction mechanisms

TF Influences from Hypergeometric Test

No TF Influences from the hypergeometric test
Module_13 21
  • CD630_22240 - Type: Gene
    Product:Putative extrachromosomal origin protein | Pathway: | COG: Function unknown
  • CD630_22451 - Type: Gene
    Product:Conserved hypothetical protein | Pathway: | COG:
  • CD630_15461 - Type: Gene
    Product:Conserved hypothetical protein | Pathway: | COG:
  • CD630_00181 - Type: Gene
    Product:Conserved hypothetical protein | Pathway: | COG:
  • CD630_21251 - Type: Gene
    Product:Conserved hypothetical protein | Pathway: | COG:
  • CD630_22670 - Type: Gene
    Product:Fragment of membrane protein, abortiveinfection-type protein (Part 2) | Pathway: | COG: Function unknown
  • CD630_20432 - Type: Gene
    Product:Conserved hypothetical protein | Pathway: | COG:
  • CD630_28880 - Type: Gene
    Product:ABC-type transport system, iron-family permease | Pathway: | COG: Inorganic ion transport and metabolism
  • CD630_18920 - Type: Gene
    Product:Putative methyltransferase, type 11 family | Pathway: | COG: Secondary metabolites biosynthesis, transport and catabolism
  • CD630_31871 - Type: Gene
    Product:Conserved hypothetical protein | Pathway: | COG:
  • CD630_28890 - Type: Gene
    Product:Putative phage protein | Pathway: | COG:
  • CD630_34531 - Type: Gene
    Product:Conserved hypothetical protein | Pathway: | COG:
  • CD630_22230 - Type: Gene
    Product:Putative extrachromosomal origin protein | Pathway: | COG: Function unknown
  • CD630_22222 - Type: Gene
    Product:Putative extrachromosomal origin protein | Pathway: | COG:
  • CD630_22221 - Type: Gene
    Product:Putative extrachromosomal origin protein | Pathway: | COG:
  • CD630_21241 - Type: Gene
    Product:Conserved hypothetical protein | Pathway: | COG:
  • CD630_09772 - Type: Gene
    Product:Putative phage protein | Pathway: | COG:
  • CD630_09771 - Type: Gene
    Product:Putative phage protein | Pathway: | COG:
  • CD630_20102 - Type: Gene
    Product:Fragment of putative transcriptional regulator(C-terminal region) | Pathway: | COG: Transcription
  • CD630_05621 - Type: Gene
    Product:Conserved hypothetical protein | Pathway: | COG:
  • CD630_23460 - Type: Gene
    Product:Putative membrane protein | Pathway: | COG: Function unknown
0.01 NA 0.50 Inferelator: 1
Hypergeometric: 0

TF Influences from Inferelator

  1. CD630_06590 - tcdR Type: Gene
    Product:Alternative RNA polymerase sigma factors | Pathway: | COG:

TF Influences from Hypergeometric Test

No TF Influences from the hypergeometric test
Module_268 7
  • CD630_22951 - Type: Gene
    Product:Fragment of putative cell surface protein(C-terminal region) | Pathway: | COG: Cell wall/membrane/envelope biogenesis
  • CD630_31561 - Type: Gene
    Product:Fragment of conserved hypothetical protein (Part2) | Pathway: | COG: Function unknown, Function unknown
  • CD630_06030 - Type: Gene
    Product:Fragment of putative membrane protein (C-terminalregion) | Pathway: | COG:
  • CD630_08460 - Type: Gene
    Product:Conserved hypothetical protein | Pathway: | COG: Function unknown
  • CD630_20071 - Type: Gene
    Product:Fragment of conserved hypothetical protein(N-terminal region) | Pathway: | COG: Transcription
  • CD630_27850 - Type: Gene
    Product:Putative membrane protein | Pathway: | COG: Function unknown
  • CD630_06020 - Type: Gene
    Product:Conserved hypothetical protein | Pathway: | COG:
NA NA 0.50 Inferelator: 1
Hypergeometric: 0

TF Influences from Inferelator

  1. CD630_20450 - Type: Gene
    Product:Transcriptional regulator, HTH-type | Pathway: | COG: Transcription

TF Influences from Hypergeometric Test

No TF Influences from the hypergeometric test
Module_33 18
  • CD630_t0070 - tRNA-Gly Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0350 - tRNA-Gln Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0150 - tRNA-Ser Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0330 - tRNA-Gly Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0780 - tRNA-Arg Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0400 - tRNA-Met Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0320 - tRNA-Leu Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0110 - tRNA-Tyr Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0580 - tRNA-Ser Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0340 - tRNA-Arg Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0390 - tRNA-Met Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0120 - tRNA-Leu Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0200 - tRNA-His Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0410 - tRNA-His Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0300 - tRNA-Thr Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0590 - tRNA-Pro Type: Gene
    Product: | Pathway: | COG:
  • CD630_t0310 - tRNA-Tyr Type: Gene
    Product: | Pathway: | COG:
0 0 0.50 Inferelator: 0
Hypergeometric: 0

TF Influences from Inferelator

No TF influences from Inferelator

TF Influences from Hypergeometric Test

No TF Influences from the hypergeometric test
Module_81 18
  • CD630_23900 - Type: Gene
    Product:Transcriptional regulator, beta-lactamsrepressor | Pathway: | COG: Transcription
  • CD630_24540 - Type: Gene
    Product:Conserved hypothetical protein | Pathway: | COG:
  • CD630_25320 - Type: Gene
    Product:Aminotransferase, alanine--glyoxylatetransaminase | Pathway: | COG: Amino acid transport and metabolism
  • CD630_23880 - Type: Gene
    Product:Putative peptidoglycan-binding/hydrolysingprotein | Pathway: | COG: Cell wall/membrane/envelope biogenesis
  • CD630_25300 - Type: Gene
    Product:Transcriptional regulator, AraC family | Pathway: | COG: Transcription
  • CD630_24510 - Type: Gene
    Product:Putative CRISPR-associated ATP-dependenthelicase | Pathway: | COG: Replication, recombination and repair
  • CD630_25310 - Type: Gene
    Product:Putative membrane protein | Pathway: | COG: Function unknown
  • CD630_25290 - Type: Gene
    Product:Conserved hypothetical protein | Pathway: | COG: Function unknown
  • CD630_t0250 - tRNA-Met Type: Gene
    Product: | Pathway: | COG:
  • CD630_24530 - Type: Gene
    Product:Putative CRISPR-associated negativeautoregulator | Pathway: | COG: Replication, recombination and repair
  • CD630_15180 - feoA Type: Gene
    Product:Ferrous iron transport protein | Pathway: | COG: Inorganic ion transport and metabolism
  • CD630_24520 - Type: Gene
    Product:Putative CRISPR-associated protein | Pathway: | COG: Replication, recombination and repair
  • CD630_06840 - Type: Gene
    Product:Putative ATP-dependent peptidase, M41 family | Pathway: | COG: Posttranslational modification, protein turnover, chaperones
  • CD630_23890 - Type: Gene
    Product:Putative beta-lactams signal-transducer | Pathway: | COG: Transcription, Signal transduction mechanisms
  • CD630_15120 - panC Type: Gene
    Product:Pantothenate synthetase | Pathway: Cofactor biosynthesis | COG: Coenzyme transport and metabolism
  • CD630_15170 - feoB Type: Gene
    Product:Ferrous iron transport protein B | Pathway: | COG: Inorganic ion transport and metabolism
  • CD630_15130 - panB Type: Gene
    Product:Ketopantoate hydroxymethyltransferase | Pathway: Cofactor biosynthesis | COG: Coenzyme transport and metabolism
  • CD630_15140 - panG Type: Gene
    Product:Putative ketopantoate reductase | Pathway: | COG: Coenzyme transport and metabolism
0.0000088 NA 0.50 Inferelator: 1
Hypergeometric: 0

TF Influences from Inferelator

  1. CD630_23900 - Type: Gene
    Product:Transcriptional regulator, beta-lactamsrepressor | Pathway: | COG: Transcription

TF Influences from Hypergeometric Test

No TF Influences from the hypergeometric test
Module_98 23
  • CD630_27260 - glyA Type: Gene
    Product:Serine hydroxymethyltransferase | Pathway: One-carbon metabolism | COG: Amino acid transport and metabolism
  • CD630_10030 - fumA Type: Gene
    Product:Fumarate hydratase class I, subunit A | Pathway: | COG: Energy production and conversion
  • CD630_22080 - Type: Gene
    Product:Transcriptional regulator, MarR family | Pathway: | COG: Transcription
  • CD630_17500 - Type: Gene
    Product:Putative CoA enzyme activase | Pathway: | COG: Lipid transport and metabolism
  • CD630_10050 - Type: Gene
    Product:Putative NAD-dependent malic enzyme | Pathway: | COG: Energy production and conversion
  • CD630_06670 - cdd4 Type: Gene
    Product:ABC-type transport system,lantibiotic/multidrug-family ATP-binding protein | Pathway: | COG: Defense mechanisms
  • CD630_06650 - cdd2 Type: Gene
    Product:ABC-type transport system,lantibiotic/multidrug-family permease | Pathway: | COG: Function unknown
  • CD630_06690 - Type: Gene
    Product:Two-component sensor histidine kinase | Pathway: | COG: Signal transduction mechanisms
  • CD630_17490 - Type: Gene
    Product:Putative 2-hydroxyacyl-CoA dehydratase | Pathway: | COG: Amino acid transport and metabolism
  • CD630_23080 - Type: Gene
    Product:Transcriptional regulator, HTH-type | Pathway: | COG: Transcription
  • CD630_09770 - Type: Gene
    Product:Putative phage protein | Pathway: | COG: Function unknown
  • CD630_09750 - Type: Gene
    Product:Putative phage protein | Pathway: | COG:
  • CD630_27270 - Type: Gene
    Product:Putative membrane protein | Pathway: | COG: Function unknown
  • CD630_09870 - Type: Gene
    Product:Putative phosphatase/hydrolase | Pathway: | COG: Replication, recombination and repair
  • CD630_10040 - fumB Type: Gene
    Product:Fumarate hydratase class I, subunit B | Pathway: | COG: Energy production and conversion
  • CD630_06660 - cdd3 Type: Gene
    Product:ABC-type transport system,lantibiotic/multidrug-family permease | Pathway: | COG: Function unknown
  • CD630_06680 - Type: Gene
    Product:Two-component response regulator | Pathway: | COG: Signal transduction mechanisms
  • CD630_27280 - Type: Gene
    Product:Putative membrane protein | Pathway: | COG: Function unknown
  • CD630_23070 - Type: Gene
    Product:Putative membrane protein | Pathway: | COG: Function unknown
  • CD630_09880 - Type: Gene
    Product:Conserved hypothetical protein | Pathway: | COG:
  • CD630_09760 - Type: Gene
    Product:Putative phage protein | Pathway: | COG:
  • CD630_13920 - Type: Gene
    Product:Putative endoribonuclease | Pathway: | COG: Translation, ribosomal structure and biogenesis
  • CD630_22070 - Type: Gene
    Product:Putative flavodoxin | Pathway: | COG: Function unknown
0.00019 0 0.50 Inferelator: 0
Hypergeometric: 0

TF Influences from Inferelator

No TF influences from Inferelator

TF Influences from Hypergeometric Test

No TF Influences from the hypergeometric test
Module_274 12
  • CD630_19640 - Type: Gene
    Product:Putative transcriptional regulator | Pathway: | COG: Transcription
  • CD630_28860 - Type: Gene
    Product:Putative drug/sodium antiporter, MATE family | Pathway: | COG: Defense mechanisms
  • CD630_16510 - Type: Gene
    Product:Putative signaling protein | Pathway: | COG: Signal transduction mechanisms
  • CD630_22850 - Type: Gene
    Product:Transcriptional regulator, GntR family | Pathway: | COG: Transcription
  • CD630_10020 - Type: Gene
    Product:Putative nucleotide/oligonucleotide bindingprotein | Pathway: | COG: Function unknown
  • CD630_18820 - Type: Gene
    Product:Site-specific recombinase | Pathway: | COG: Replication, recombination and repair
  • CD630_25980 - Type: Gene
    Product:Putative oligosaccharide deacetylase | Pathway: | COG: Carbohydrate transport and metabolism
  • CD630_13350 - Type: Gene
    Product:Transcriptional regulator, MarR family | Pathway: | COG: Transcription
  • CD630_08510 - Type: Gene
    Product:Putative membrane protein | Pathway: | COG: Function unknown
  • CD630_25990 - Type: Gene
    Product:Putative transcriptional regulator | Pathway: | COG: Transcription
  • CD630_36460 - Type: Gene
    Product:Transcriptional regulator, GntR family | Pathway: | COG: Transcription
  • CD630_08520 - Type: Gene
    Product:Transcriptional regulator, MarR family | Pathway: | COG: Transcription
0.0000019 NA 0.50 Inferelator: 2
Hypergeometric: 0

TF Influences from Inferelator

  1. CD630_19590 - Type: Gene
    Product:Two-component response regulator | Pathway: | COG: Signal transduction mechanisms
  2. CD630_25990 - Type: Gene
    Product:Putative transcriptional regulator | Pathway: | COG: Transcription

TF Influences from Hypergeometric Test

No TF Influences from the hypergeometric test
Module_68 4
  • CD630_12910 - dacF Type: Gene
    Product:D-alanyl-D-alanine carboxypeptidase | Pathway: | COG: Cell wall/membrane/envelope biogenesis
  • CD630_12900 - Type: Gene
    Product:Putative small acid-soluble spore protein SASP | Pathway: | COG:
  • CD630_07080 - pepD Type: Gene
    Product:Peptidase D, aminoacyl-histidine dipeptidase | Pathway: | COG: Amino acid transport and metabolism
  • CD630_32220 - sdaB Type: Gene
    Product:L-serine dehydratase | Pathway: | COG: Amino acid transport and metabolism
NA NA 0.50 Inferelator: 2
Hypergeometric: 0

TF Influences from Inferelator

  1. CD630_06290 - Type: Gene
    Product:Transcriptional regulator, Crp family | Pathway: | COG: Transcription
  2. CD630_25990 - Type: Gene
    Product:Putative transcriptional regulator | Pathway: | COG: Transcription

TF Influences from Hypergeometric Test

No TF Influences from the hypergeometric test