Organism : Bacillus subtilis | Module List :
Regulation information for BSU14750(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU14750
|Gene||Common Name||Description||Module membership|
|BSU00490||spoVG||regulatory protein SpoVG (RefSeq)||25, 353|
|BSU03200||ycgM||proline oxidase (RefSeq)||229, 353|
|BSU03210||ycgN||1-pyrroline-5-carboxylate dehydrogenase (RefSeq)||229, 353|
|BSU03480||srfAA||surfactin synthetase (RefSeq)||90, 353|
|BSU03490||srfAB||surfactin synthetase (RefSeq)||90, 353|
|BSU03500||comS||regulator of genetic competence (RefSeq)||90, 353|
|BSU03510||srfAC||surfactin synthetase (RefSeq)||90, 353|
|BSU03520||srfAD||surfactin synthetase (RefSeq)||90, 353|
|BSU03770||rapC||response regulator aspartate phosphatase (RefSeq)||90, 353|
|BSU04410||ydbB||putative enzyme ; cupin family (RefSeq)||29, 353|
|BSU04420||ydbC||hypothetical protein (RefSeq)||29, 353|
|BSU05380||ydfE||putative flavoprotein (RefSeq)||174, 239|
|BSU08470||yfhB||putative isomerase (RefSeq)||90, 353|
|BSU09410||phoA||alkaline phosphatase A (RefSeq)||165, 353|
|BSU10310||yhfO||putative N-acetyltransferase (RefSeq)||229, 353|
|BSU10750||yisK||putative catabolic enzyme (RefSeq)||229, 353|
|BSU12460||xlyB||N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein (RefSeq)||239, 306|
|BSU12680||xkdO||conserved hypothetical protein; PBSX phage protein (RefSeq)||239, 269|
|BSU12710||xkdR||conserved hypothetical protein; putative PBSX prophage protein (RefSeq)||239, 269|
|BSU12790||xhlA||defective prophage PBSX putative enzyme (RefSeq)||7, 239|
|BSU13480||ykrK||hypothetical protein (RefSeq)||150, 239|
|BSU14700||nprE||extracellular neutral metalloprotease (RefSeq)||334, 353|
|BSU14750||ylaE||hypothetical protein (RefSeq)||239, 353|
|BSU14800||ylaJ||putative lipoprotein (RefSeq)||239, 263|
|BSU18600||yozQ||hypothetical protein (RefSeq)||55, 239|
|BSU18760||yoaU||putative transcriptional regulator (LysR family) (RefSeq)||200, 239|
|BSU18920||phrK||secreted regulator of the activity of phosphatase RapK (RefSeq)||239, 291|
|BSU19030||yobO||putative phage-related pre-neck appendage protein (RefSeq)||12, 353|
|BSU19090||yobU||putative effector of transcriptional regulator (RefSeq)||64, 239|
|BSU19400||sodC||superoxide dismutase (exported lipoprotein) (RefSeq)||239, 359|
|BSU19410||cwlS||peptidoglycan hydrolase (cell wall-binding d,l-endopeptidase) (RefSeq)||239, 353|
|BSU22000||sspL||small acid-soluble spore protein (RefSeq)||200, 239|
|BSU24590||yqhG||hypothetical protein (RefSeq)||239, 411|
|BSU25060||yqfZ||factor involved in motility (RefSeq)||123, 239|
|BSU25120||yqfT||hypothetical protein (RefSeq)||239, 280|
|BSU26120||yqbG||conserved hypothetical protein; skin element (RefSeq)||96, 239|
|BSU26940||yraH||putative lyase (RefSeq)||86, 239|
|BSU27570||yrzK||hypothetical protein (RefSeq)||150, 239|
|BSU27670||spoVB||putative putative translocase with flippase function for teichoic acid synthesis; involved in spore cortex synthesis (stage V sporulation) (RefSeq)||127, 239|
|BSU29910||ytzH||hypothetical protein (RefSeq)||127, 239|
|BSU32270||yutH||spore coat-associated protein (RefSeq)||127, 239|
|BSU32280||yutG||putative phosphatidylglycerophosphatase A (RefSeq)||27, 239|
|BSU32320||yutC||putative lipoprotein (RefSeq)||239, 255|
|BSU33540||yvaB||azoreductase (RefSeq)||90, 353|
|BSU34390||pnbA||para-nitrobenzyl esterase (intracellular esterase B) (RefSeq)||353, 359|
|BSU35770||tagC||putative polyglycerol phosphate assembly and export protein (teichoic acid biosynthesis) (RefSeq)||239, 307|
|BSU36090||ywrE||hypothetical protein (RefSeq)||166, 239|
|BSU37460||rapF||response regulator aspartate phosphatase (RefSeq)||302, 353|
|BSU37470||phrF||secreted regulator of the activity of phosphatase RapF (RefSeq)||302, 353|
|BSU37650||cysL||regulator of sulfur assimilation CysL, activates cysJI expression (RefSeq)||31, 353|
|BSU38800||yxkH||putative exported polysaccharide deacetylase, lipoprotein (RefSeq)||96, 239|
|BSU40350||rocR||transcriptional regulator (NtrC/NifA family) (RefSeq)||229, 353|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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