Thaps_bicluster_0041 Residual: 0.50
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.

Summary

Title Residual Model version Organism
Thaps_bicluster_0041 0.50 Thalassiosira pseudonana

Module Plots

Motifs

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Members

Displaying 1 - 63 of 63
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1010 Glyco_tranf_GTA_type superfamily

1010 - Glyco_tranf_GTA_type superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

1010
10224 hypothetical protein

10224 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10224
11480 PKc

11480 - PKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004674, GO:0004713

CD Domains:

Go To Gene Page:

11480
11523 hypothetical protein

11523 - hypothetical protein

GO Terms:

GO:0005179, GO:0005576

CD Domains:

Go To Gene Page:

11523
11988 hypothetical protein

11988 - hypothetical protein

GO Terms:

GO:0000151, GO:0004842, GO:0008270, GO:0016567

CD Domains:

Go To Gene Page:

11988
1495 RIB43A

1495 - RIB43A

GO Terms:

NA

CD Domains:

Go To Gene Page:

1495
18090 Thioredoxin_like superfamily

18090 - Thioredoxin_like superfamily

GO Terms:

GO:0005489, GO:0006118

CD Domains:

Go To Gene Page:

18090
1896 hypothetical protein

1896 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1896
20647 p23_NUDC_like

20647 - p23_NUDC_like

GO Terms:

NA

CD Domains:

Go To Gene Page:

20647
21137 hypothetical protein

21137 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21137
21552 hypothetical protein

21552 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21552
21749 hypothetical protein

21749 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21749
21895 hypothetical protein

21895 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21895
23066 hypothetical protein

23066 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23066
23672 hypothetical protein

23672 - hypothetical protein

GO Terms:

GO:0008757

CD Domains:

Go To Gene Page:

23672
23735 COG3899

23735 - COG3899

GO Terms:

NA

CD Domains:

Go To Gene Page:

23735
23750 hypothetical protein

23750 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23750
23794 hypothetical protein

23794 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23794
23986 hypothetical protein

23986 - hypothetical protein

GO Terms:

GO:0008061

CD Domains:

Go To Gene Page:

23986
24207 hypothetical protein

24207 - hypothetical protein

GO Terms:

GO:0004402

CD Domains:

Go To Gene Page:

24207
25024 SEP superfamily

25024 - SEP superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

25024
25047 hypothetical protein

25047 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25047
25528 hypothetical protein

25528 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25528
261027 class_II_aaRS-like_core superfamily

261027 - class_II_aaRS-like_core superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

261027
261403 MFS_1

261403 - MFS_1

GO Terms:

NA

CD Domains:

Go To Gene Page:

261403
261539 PSP1

261539 - PSP1

GO Terms:

NA

CD Domains:

Go To Gene Page:

261539
261660 GH18_chitinase-like superfamily

261660 - GH18_chitinase-like superfamily

GO Terms:

GO:0008152, GO:0016787, GO:0003824, GO:0005975, GO:0004568, GO:0008843

CD Domains:

Go To Gene Page:

261660
262266 (Tp_Myb1R9) SANT_TRF

262266 - (Tp_Myb1R9) SANT_TRF

GO Terms:

GO:0003677, GO:0005634

CD Domains:

Go To Gene Page:

262266
262599 HA

262599 - HA

GO Terms:

NA

CD Domains:

Go To Gene Page:

262599
263332 ANK

263332 - ANK

GO Terms:

NA

CD Domains:

Go To Gene Page:

263332
263454 Tryp_SPc

263454 - Tryp_SPc

GO Terms:

GO:0004295, GO:0006508, GO:0004263

CD Domains:

Go To Gene Page:

263454
264699 ATS1

264699 - ATS1

GO Terms:

GO:0008766, GO:0016881, GO:0018169

CD Domains:

Go To Gene Page:

264699
264808 P4Hc

264808 - P4Hc

GO Terms:

GO:0016706, GO:0019538, GO:0004656, GO:0016222

CD Domains:

Go To Gene Page:

264808
264903 (CHT1_1) GH18_chitinase-like superfamily

264903 - (CHT1_1) GH18_chitinase-like superfamily

GO Terms:

GO:0008152, GO:0016787, GO:0003824, GO:0005975, GO:0004568, GO:0008843

CD Domains:

Go To Gene Page:

264903
268902 cyclophilin superfamily

268902 - cyclophilin superfamily

GO Terms:

GO:0006457

CD Domains:

Go To Gene Page:

268902
269273 hypothetical protein

269273 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

269273
269572 Endonuclease_1 superfamily

269572 - Endonuclease_1 superfamily

GO Terms:

GO:0004518

CD Domains:

Go To Gene Page:

269572
269792 (ANX1) Annexin

269792 - (ANX1) Annexin

GO Terms:

GO:0005509, GO:0005544, GO:0050819, GO:0047394

CD Domains:

Go To Gene Page:

269792
270127 (CHT1_2) Glyco_18

270127 - (CHT1_2) Glyco_18

GO Terms:

GO:0005576, GO:0006030, GO:0008061

CD Domains:

Go To Gene Page:

270127
2717 hypothetical protein

2717 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2717
27318 hypothetical protein

27318 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

27318
2804 hypothetical protein

2804 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2804
2838 hypothetical protein

2838 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2838
3043 HA

3043 - HA

GO Terms:

GO:0003824, GO:0008152

CD Domains:

Go To Gene Page:

3043
31447 Mito_carr

31447 - Mito_carr

GO Terms:

GO:0005488, GO:0006810, GO:0016020, GO:0005743

CD Domains:

Go To Gene Page:

31447
31859 Sm_B

31859 - Sm_B

GO Terms:

GO:0005634, GO:0005732, GO:0006397, GO:0030529

CD Domains:

Go To Gene Page:

31859
34714 nucleoside_deaminase

34714 - nucleoside_deaminase

GO Terms:

GO:0008270, GO:0016787, GO:0003933, GO:0016814

CD Domains:

Go To Gene Page:

34714
3630 hypothetical protein

3630 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3630
4182 DUF3633 superfamily

4182 - DUF3633 superfamily

GO Terms:

GO:0008270

CD Domains:

Go To Gene Page:

4182
4306 hypothetical protein

4306 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4306
6461 CIAPIN1

6461 - CIAPIN1

GO Terms:

GO:0005509

CD Domains:

Go To Gene Page:

6461
6522 Sm_F

6522 - Sm_F

GO Terms:

GO:0005634, GO:0005732, GO:0006397, GO:0030529

CD Domains:

Go To Gene Page:

6522
6914 hypothetical protein

6914 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6914
7079 ANK

7079 - ANK

GO Terms:

NA

CD Domains:

Go To Gene Page:

7079
7329 hypothetical protein

7329 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7329
8789 hypothetical protein

8789 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8789
9015 hypothetical protein

9015 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9015
9122 hypothetical protein

9122 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9122
9282 hypothetical protein

9282 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9282
9378 hypothetical protein

9378 - hypothetical protein

GO Terms:

GO:0000151, GO:0004842, GO:0008270, GO:0016567

CD Domains:

Go To Gene Page:

9378
9587 hypothetical protein

9587 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9587
ThpsCs002 (ffs)

ThpsCs002 - (ffs)

GO Terms:

NA

CD Domains:

Go To Gene Page:

ThpsCs002
ThpsCt014 (trnE(uuc))

ThpsCt014 - (trnE(uuc))

GO Terms:

NA

CD Domains:

Go To Gene Page:

ThpsCt014

GO Enrichment

GO ID Go Term p-value q-value Cluster
GO:0006397 mRNA processing 0.00257723 1 Thaps_bicluster_0041
GO:0050819 negative regulation of coagulation 0.00701752 1 Thaps_bicluster_0041
GO:0005975 carbohydrate metabolism 0.0277582 1 Thaps_bicluster_0041
GO:0016567 protein ubiquitination 0.030567 1 Thaps_bicluster_0041
GO:0006030 chitin metabolism 0.0714116 1 Thaps_bicluster_0041
GO:0019538 protein metabolism 0.150166 1 Thaps_bicluster_0041
GO:0008152 metabolism 0.167146 1 Thaps_bicluster_0041
GO:0006457 protein folding 0.371189 1 Thaps_bicluster_0041
GO:0006810 transport 0.483364 1 Thaps_bicluster_0041
GO:0006468 protein amino acid phosphorylation 0.535543 1 Thaps_bicluster_0041

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