Module 28 Residual: 0.52

Title Bicluster Model Residual Score
bicluster_0028 v02 0.52 -17.50
Displaying 1 - 13 of 13
Rv0118c Oxalyl-CoA decarboxylase (EC 4.1.1.8)

Details for Rv0118c - Oxalyl-CoA decarboxylase (EC 4.1.1.8)

GO Terms: GO:0005886, GO:0040007

PATRIC Pathways: Glyoxylate and dicarboxylate metabolism

Essentiality: Griffin Essential: 0.03 | In vitro Essential: 0.15 | In vivo Essential: NA

Go to Gene Page: Rv0118c

Tuberculist Genomic Region

Rv0119 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

Details for Rv0119 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

GO Terms: NA

PATRIC Pathways: Fatty acid metabolism

Essentiality: Griffin Essential: 0.00 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv0119

Tuberculist Genomic Region

Rv0392c NADH dehydrogenase (EC 1.6.99.3)

Details for Rv0392c - NADH dehydrogenase (EC 1.6.99.3)

GO Terms: GO:0003954, GO:0003955, GO:0005829, GO:0005886, GO:0044119

PATRIC Pathways: Oxidative phosphorylation

Essentiality: Griffin Essential: 0.87 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv0392c

Tuberculist Genomic Region

Rv0393 13E12 repeat family protein

Details for Rv0393 - 13E12 repeat family protein

GO Terms: NA

PATRIC Pathways: Not assigned

Essentiality: Griffin Essential: 0.72 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv0393

Tuberculist Genomic Region

Rv1032c Sensor protein basS/pmrB (EC 2.7.3.-)

Details for Rv1032c - Sensor protein basS/pmrB (EC 2.7.3.-)

GO Terms: GO:0004672, GO:0005509, GO:0030145, GO:0046777

PATRIC Pathways: Not assigned

Essentiality: Griffin Essential: 0.96 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv1032c

Tuberculist Genomic Region

Rv1033c DNA-binding response regulator TrcR

Details for Rv1033c - DNA-binding response regulator TrcR

GO Terms: GO:0008150, GO:0008150, GO:0003677, GO:0045892, GO:0045893

PATRIC Pathways: Not assigned

Essentiality: Griffin Essential: 0.98 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv1033c

Tuberculist Genomic Region

Rv1034c transposase

Details for Rv1034c - transposase

GO Terms: NA

PATRIC Pathways: Not assigned

Essentiality: Griffin Essential: 0.78 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv1034c

Tuberculist Genomic Region

Rv1375

Details for Rv1375 -

GO Terms: NA

PATRIC Pathways: Not assigned

Essentiality: Griffin Essential: 1.00 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv1375

Tuberculist Genomic Region

Rv1376

Details for Rv1376 -

GO Terms: NA

PATRIC Pathways: Not assigned

Essentiality: Griffin Essential: 0.99 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv1376

Tuberculist Genomic Region

Rv2026c Universal stress protein family

Details for Rv2026c - Universal stress protein family

GO Terms: GO:0040007

PATRIC Pathways: Not assigned

Essentiality: Griffin Essential: 0.32 | In vitro Essential: 0.15 | In vivo Essential: NA

Go to Gene Page: Rv2026c

Tuberculist Genomic Region

Rv2027c Histidine kinase response regulator

Details for Rv2027c - Histidine kinase response regulator

GO Terms: GO:0000287, GO:0004672, GO:0004673, GO:0005509, GO:0005524, GO:0019825, GO:0019826, GO:0020037, GO:0046777, GO:0070025, GO:0070026, GO:0070483

PATRIC Pathways: Not assigned

Essentiality: Griffin Essential: 0.98 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv2027c

Tuberculist Genomic Region

Rv2029c Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56)

Details for Rv2029c - Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56)

GO Terms: NA

PATRIC Pathways: Galactose metabolism, Fructose and mannose metabolism

Essentiality: Griffin Essential: 0.94 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv2029c

Tuberculist Genomic Region

Rv2045c Probable carboxylesterase LipT (EC 3.1.1.-)

Details for Rv2045c - Probable carboxylesterase LipT (EC 3.1.1.-)

GO Terms: NA

PATRIC Pathways: 1,4-Dichlorobenzene degradation, Tropane, piperidine and pyridine alkaloid biosynthesis, Ascorbate and aldarate metabolism, 2,4-Dichlorobenzoate degradation, Glycerophospholipid metabolism, Bisphenol A degradation, Retinol metabolism

Essentiality: Griffin Essential: 0.60 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv2045c

Tuberculist Genomic Region

Displaying 1 - 1 of 1
Motif 1 Motif 2
e-value: 0.00029 e-value: 1.5
Displaying 1 - 1 of 1
Module GO Term Enrichment Descriptions
GO:0007165 | GO:0023052 | GO:0044700 | GO:0007154 | GO:0050896 | GO:0004871 | GO:0060089 | GO:0000155 | GO:0004872 | GO:0038023 signal transduction | signaling | single organism signaling | cell communication | response to stimulus | signal transducer activity | molecular transducer activity | phosphorelay sensor kinase activity | receptor activity | signaling receptor activity
Displaying 1 - 24 of 24
GO:0005886 |

plasma membrane

GO:0040007 |

growth

GO:0003954 |

NADH dehydrogenase activity

GO:0003955 |

NAD(P)H dehydrogenase (quinone) activity

GO:0005829 |

cytosol

GO:0044119 |

growth of symbiont in host cell

GO:0004672 |

protein kinase activity

GO:0005509 |

calcium ion binding

GO:0030145 |

manganese ion binding

GO:0046777 |

protein autophosphorylation

GO:0008150 |

biological_process

GO:0003677 |

DNA binding

GO:0045892 |

negative regulation of transcription, DNA-dependent

GO:0045893 |

positive regulation of transcription, DNA-dependent

GO:0000287 |

magnesium ion binding

GO:0004673 |

protein histidine kinase activity

GO:0005524 |

ATP binding

GO:0019825 |

oxygen binding

GO:0019826 |

oxygen sensor activity

GO:0020037 |

heme binding

GO:0070025 |

carbon monoxide binding

GO:0070026 |

nitric oxide binding

GO:0070483 |

detection of hypoxia